Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.85■□□□□ 0.93
TNFP01375 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFP01375 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFP01375 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFP01375 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.85■□□□□ 0.93
TNFP01375 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.85■□□□□ 0.93
TNFP01375 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TNFP01375 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TNFP01375 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.84■□□□□ 0.93
TNFP01375 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TNFP01375 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFP01375 NCF1B-203ENST00000435988 1254 ntBASIC20.84■□□□□ 0.93
TNFP01375 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.84■□□□□ 0.93
TNFP01375 AL109923.1-201ENST00000618799 583 ntBASIC20.84■□□□□ 0.93
TNFP01375 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.84■□□□□ 0.93
TNFP01375 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.84■□□□□ 0.93
TNFP01375 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TNFP01375 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.84■□□□□ 0.93
TNFP01375 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TNFP01375 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
TNFP01375 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TNFP01375 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TNFP01375 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TNFP01375 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
TNFP01375 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TNFP01375 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.83■□□□□ 0.93
TNFP01375 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.83■□□□□ 0.93
TNFP01375 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.83■□□□□ 0.93
TNFP01375 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.83■□□□□ 0.93
TNFP01375 SLC7A5P2-201ENST00000553010 536 ntBASIC20.83■□□□□ 0.93
TNFP01375 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.83■□□□□ 0.93
TNFP01375 AC005181.1-201ENST00000604782 1256 ntBASIC20.83■□□□□ 0.93
TNFP01375 AC010536.3-201ENST00000620306 533 ntBASIC20.83■□□□□ 0.93
TNFP01375 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TNFP01375 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TNFP01375 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TNFP01375 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TNFP01375 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TNFP01375 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TNFP01375 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TNFP01375 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TNFP01375 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TNFP01375 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.82■□□□□ 0.92
TNFP01375 GPX1P1-201ENST00000388829 606 ntBASIC20.82■□□□□ 0.92
TNFP01375 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.82■□□□□ 0.92
TNFP01375 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.82■□□□□ 0.92
TNFP01375 AC104771.1-201ENST00000603335 964 ntBASIC20.82■□□□□ 0.92
TNFP01375 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.82■□□□□ 0.92
TNFP01375 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TNFP01375 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.82■□□□□ 0.92
TNFP01375 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
TNFP01375 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TNFP01375 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFP01375 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
TNFP01375 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.81■□□□□ 0.92
TNFP01375 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
TNFP01375 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.81■□□□□ 0.92
TNFP01375 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFP01375 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFP01375 POU5F1P4-201ENST00000413175 1085 ntBASIC20.81■□□□□ 0.92
TNFP01375 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
TNFP01375 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TNFP01375 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFP01375 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFP01375 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFP01375 C9orf163-202ENST00000624034 2573 ntBASIC20.81■□□□□ 0.92
TNFP01375 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFP01375 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
TNFP01375 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.8■□□□□ 0.92
TNFP01375 AL121832.2-201ENST00000610979 668 ntBASIC20.8■□□□□ 0.92
TNFP01375 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
TNFP01375 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TNFP01375 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.8■□□□□ 0.92
TNFP01375 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFP01375 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TNFP01375 AC080038.3-201ENST00000623346 1952 ntBASIC20.79■□□□□ 0.92
TNFP01375 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TNFP01375 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TNFP01375 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.79■□□□□ 0.92
TNFP01375 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.79■□□□□ 0.92
TNFP01375 TERF1P5-201ENST00000477545 1207 ntBASIC20.79■□□□□ 0.92
TNFP01375 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.79■□□□□ 0.92
TNFP01375 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TNFP01375 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.79■□□□□ 0.92
TNFP01375 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TNFP01375 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.79■□□□□ 0.92
TNFP01375 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
TNFP01375 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TNFP01375 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.78■□□□□ 0.92
TNFP01375 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
TNFP01375 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms