Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.57■□□□□ 0.88
CLDN9O95484 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CLDN9O95484 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CLDN9O95484 AC110285.6-201ENST00000617652 491 ntBASIC20.57■□□□□ 0.88
CLDN9O95484 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CLDN9O95484 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.57■□□□□ 0.88
CLDN9O95484 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN9O95484 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.57■□□□□ 0.88
CLDN9O95484 AC005229.4-201ENST00000610085 2198 ntBASIC20.56■□□□□ 0.88
CLDN9O95484 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.56■□□□□ 0.88
CLDN9O95484 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN9O95484 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.56■□□□□ 0.88
CLDN9O95484 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN9O95484 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.56■□□□□ 0.88
CLDN9O95484 AP001330.3-201ENST00000520123 633 ntBASIC20.56■□□□□ 0.88
CLDN9O95484 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.56■□□□□ 0.88
CLDN9O95484 AL355001.2-201ENST00000620617 1191 ntBASIC20.56■□□□□ 0.88
CLDN9O95484 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN9O95484 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN9O95484 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.56■□□□□ 0.88
CLDN9O95484 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.56■□□□□ 0.88
CLDN9O95484 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN9O95484 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.56■□□□□ 0.88
CLDN9O95484 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.56■□□□□ 0.88
CLDN9O95484 FEM1AP4-201ENST00000443167 1987 ntBASIC20.55■□□□□ 0.88
CLDN9O95484 TSPY26P-201ENST00000476365 1326 ntBASIC20.55■□□□□ 0.88
CLDN9O95484 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN9O95484 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CLDN9O95484 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN9O95484 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN9O95484 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.55■□□□□ 0.88
CLDN9O95484 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.55■□□□□ 0.88
CLDN9O95484 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.55■□□□□ 0.88
CLDN9O95484 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CLDN9O95484 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN9O95484 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.54■□□□□ 0.88
CLDN9O95484 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CLDN9O95484 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.54■□□□□ 0.88
CLDN9O95484 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.54■□□□□ 0.88
CLDN9O95484 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.54■□□□□ 0.88
CLDN9O95484 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CLDN9O95484 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.54■□□□□ 0.88
CLDN9O95484 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN9O95484 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.53■□□□□ 0.88
CLDN9O95484 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.53■□□□□ 0.88
CLDN9O95484 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.53■□□□□ 0.88
CLDN9O95484 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.53■□□□□ 0.88
CLDN9O95484 AC105233.4-201ENST00000642045 216 ntBASIC20.53■□□□□ 0.88
CLDN9O95484 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 RASA4CP-201ENST00000424092 1398 ntBASIC20.53■□□□□ 0.88
CLDN9O95484 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN9O95484 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN9O95484 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.52■□□□□ 0.88
CLDN9O95484 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN9O95484 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CLDN9O95484 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN9O95484 MIR939-201ENST00000401314 82 ntBASIC20.52■□□□□ 0.88
CLDN9O95484 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN9O95484 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.52■□□□□ 0.88
CLDN9O95484 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.52■□□□□ 0.88
CLDN9O95484 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN9O95484 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN9O95484 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.52■□□□□ 0.87
CLDN9O95484 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.52■□□□□ 0.87
CLDN9O95484 AC009237.3-201ENST00000393279 1427 ntBASIC20.52■□□□□ 0.87
CLDN9O95484 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CLDN9O95484 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.51■□□□□ 0.87
CLDN9O95484 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN9O95484 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN9O95484 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CLDN9O95484 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLDN9O95484 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms