Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
ABCA1O95477 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
ABCA1O95477 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA1O95477 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.78■□□□□ 0.44
ABCA1O95477 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
ABCA1O95477 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA1O95477 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA1O95477 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC17.77■□□□□ 0.44
ABCA1O95477 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.77■□□□□ 0.44
ABCA1O95477 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.77■□□□□ 0.44
ABCA1O95477 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
ABCA1O95477 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA1O95477 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA1O95477 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.77■□□□□ 0.43
ABCA1O95477 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
ABCA1O95477 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.77■□□□□ 0.43
ABCA1O95477 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA1O95477 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
ABCA1O95477 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
ABCA1O95477 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC17.76■□□□□ 0.43
ABCA1O95477 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.76■□□□□ 0.43
ABCA1O95477 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.76■□□□□ 0.43
ABCA1O95477 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.76■□□□□ 0.43
ABCA1O95477 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.76■□□□□ 0.43
ABCA1O95477 AC138907.5-202ENST00000569484 235 ntBASIC17.76■□□□□ 0.43
ABCA1O95477 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
ABCA1O95477 AC083880.1-201ENST00000608266 535 ntBASIC17.76■□□□□ 0.43
ABCA1O95477 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
ABCA1O95477 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.76■□□□□ 0.43
ABCA1O95477 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA1O95477 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
ABCA1O95477 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.75■□□□□ 0.43
ABCA1O95477 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.75■□□□□ 0.43
ABCA1O95477 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ABCA1O95477 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 AC068338.2-201ENST00000563278 1430 ntBASIC17.75■□□□□ 0.43
ABCA1O95477 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC17.75■□□□□ 0.43
ABCA1O95477 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.75■□□□□ 0.43
ABCA1O95477 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.75■□□□□ 0.43
ABCA1O95477 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.75■□□□□ 0.43
ABCA1O95477 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
ABCA1O95477 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.75■□□□□ 0.43
ABCA1O95477 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA1O95477 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.74■□□□□ 0.43
ABCA1O95477 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.74■□□□□ 0.43
ABCA1O95477 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.74■□□□□ 0.43
ABCA1O95477 AC010141.2-201ENST00000452426 721 ntBASIC17.74■□□□□ 0.43
ABCA1O95477 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
ABCA1O95477 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.74■□□□□ 0.43
ABCA1O95477 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.74■□□□□ 0.43
ABCA1O95477 MIR4758-201ENST00000577688 71 ntBASIC17.74■□□□□ 0.43
ABCA1O95477 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.74■□□□□ 0.43
ABCA1O95477 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA1O95477 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA1O95477 DUSP8P5-201ENST00000422884 1815 ntBASIC17.73■□□□□ 0.43
ABCA1O95477 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA1O95477 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA1O95477 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.73■□□□□ 0.43
ABCA1O95477 KRT18P20-201ENST00000548986 1279 ntBASIC17.73■□□□□ 0.43
ABCA1O95477 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA1O95477 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA1O95477 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA1O95477 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
ABCA1O95477 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA1O95477 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ABCA1O95477 RPS2P52-201ENST00000469610 820 ntBASIC17.73■□□□□ 0.43
ABCA1O95477 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.73■□□□□ 0.43
ABCA1O95477 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
ABCA1O95477 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.73■□□□□ 0.43
ABCA1O95477 DUSP8P3-201ENST00000399571 1760 ntBASIC17.73■□□□□ 0.43
ABCA1O95477 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA1O95477 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
ABCA1O95477 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA1O95477 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.72■□□□□ 0.43
ABCA1O95477 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ABCA1O95477 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.72■□□□□ 0.43
ABCA1O95477 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.72■□□□□ 0.43
ABCA1O95477 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.72■□□□□ 0.43
ABCA1O95477 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.72■□□□□ 0.43
ABCA1O95477 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
ABCA1O95477 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms