Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 LINC01521-201ENST00000504184 1943 ntBASIC20.92■□□□□ 0.94
TRIM13O60858 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM13O60858 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM13O60858 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM13O60858 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM13O60858 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
TRIM13O60858 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM13O60858 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM13O60858 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM13O60858 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM13O60858 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
TRIM13O60858 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRIM13O60858 AC092171.4-201ENST00000609130 632 ntBASIC20.9■□□□□ 0.94
TRIM13O60858 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.9■□□□□ 0.94
TRIM13O60858 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM13O60858 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM13O60858 AL049796.1-201ENST00000565336 1766 ntBASIC20.9■□□□□ 0.94
TRIM13O60858 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
TRIM13O60858 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.89■□□□□ 0.94
TRIM13O60858 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM13O60858 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM13O60858 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM13O60858 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM13O60858 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.89■□□□□ 0.93
TRIM13O60858 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM13O60858 AC010525.1-201ENST00000585559 441 ntBASIC20.89■□□□□ 0.93
TRIM13O60858 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TRIM13O60858 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM13O60858 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM13O60858 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM13O60858 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM13O60858 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
TRIM13O60858 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM13O60858 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 AC003102.1-202ENST00000563394 1796 ntBASIC20.88■□□□□ 0.93
TRIM13O60858 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM13O60858 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM13O60858 MIR3621-201ENST00000580529 85 ntBASIC20.88■□□□□ 0.93
TRIM13O60858 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM13O60858 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TRIM13O60858 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
TRIM13O60858 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRIM13O60858 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM13O60858 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM13O60858 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
TRIM13O60858 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM13O60858 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM13O60858 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM13O60858 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM13O60858 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM13O60858 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM13O60858 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM13O60858 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM13O60858 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM13O60858 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM13O60858 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM13O60858 SRD5A1P1-201ENST00000442297 786 ntBASIC20.86■□□□□ 0.93
TRIM13O60858 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM13O60858 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.86■□□□□ 0.93
TRIM13O60858 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.86■□□□□ 0.93
TRIM13O60858 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM13O60858 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM13O60858 AP004607.7-201ENST00000527152 1677 ntBASIC20.86■□□□□ 0.93
TRIM13O60858 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
TRIM13O60858 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
TRIM13O60858 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
TRIM13O60858 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
TRIM13O60858 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM13O60858 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM13O60858 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms