Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
XRCC3O43542 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.2■□□□□ 0.5
XRCC3O43542 ABHD17AP5-201ENST00000580133 923 ntBASIC18.2■□□□□ 0.5
XRCC3O43542 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
XRCC3O43542 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.2■□□□□ 0.5
XRCC3O43542 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.2■□□□□ 0.5
XRCC3O43542 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.2■□□□□ 0.5
XRCC3O43542 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC3O43542 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC3O43542 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.19■□□□□ 0.5
XRCC3O43542 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
XRCC3O43542 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC3O43542 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC3O43542 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.19■□□□□ 0.5
XRCC3O43542 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.19■□□□□ 0.5
XRCC3O43542 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
XRCC3O43542 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.19■□□□□ 0.5
XRCC3O43542 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC18.19■□□□□ 0.5
XRCC3O43542 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC18.19■□□□□ 0.5
XRCC3O43542 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC3O43542 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
XRCC3O43542 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC3O43542 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC3O43542 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.19■□□□□ 0.5
XRCC3O43542 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
XRCC3O43542 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.18■□□□□ 0.5
XRCC3O43542 AC021242.3-201ENST00000607598 1377 ntBASIC18.18■□□□□ 0.5
XRCC3O43542 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.18■□□□□ 0.5
XRCC3O43542 AC103724.3-201ENST00000564481 992 ntBASIC18.18■□□□□ 0.5
XRCC3O43542 BRD4-212ENST00000630599 726 ntTSL 2 BASIC18.18■□□□□ 0.5
XRCC3O43542 AC007952.6-201ENST00000573168 2673 ntBASIC18.18■□□□□ 0.5
XRCC3O43542 AC003957.1-201ENST00000625108 2673 ntBASIC18.18■□□□□ 0.5
XRCC3O43542 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.18■□□□□ 0.5
XRCC3O43542 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
XRCC3O43542 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
XRCC3O43542 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
XRCC3O43542 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
XRCC3O43542 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.17■□□□□ 0.5
XRCC3O43542 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 TSPY13P-201ENST00000338964 914 ntBASIC18.17■□□□□ 0.5
XRCC3O43542 AC103834.1-201ENST00000520383 144 ntBASIC18.17■□□□□ 0.5
XRCC3O43542 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.17■□□□□ 0.5
XRCC3O43542 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.17■□□□□ 0.5
XRCC3O43542 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
XRCC3O43542 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.17■□□□□ 0.5
XRCC3O43542 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
XRCC3O43542 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
XRCC3O43542 AP005212.1-201ENST00000581547 1997 ntBASIC18.16■□□□□ 0.5
XRCC3O43542 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
XRCC3O43542 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.16■□□□□ 0.5
XRCC3O43542 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
XRCC3O43542 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
XRCC3O43542 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.16■□□□□ 0.5
XRCC3O43542 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.16■□□□□ 0.5
XRCC3O43542 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
XRCC3O43542 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms