Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC37.01■■■■□ 3.51
CUX2O14529 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC37.01■■■■□ 3.51
CUX2O14529 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC37.01■■■■□ 3.51
CUX2O14529 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC37.01■■■■□ 3.51
CUX2O14529 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC37.01■■■■□ 3.51
CUX2O14529 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC37■■■■□ 3.51
CUX2O14529 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
CUX2O14529 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC37■■■■□ 3.51
CUX2O14529 TSPY15P-201ENST00000457163 923 ntBASIC37■■■■□ 3.51
CUX2O14529 AL162412.1-201ENST00000567129 965 ntBASIC37■■■■□ 3.51
CUX2O14529 MIR4785-201ENST00000585005 73 ntBASIC37■■■■□ 3.51
CUX2O14529 SNX21-213ENST00000614929 587 ntTSL 5 BASIC37■■■■□ 3.51
CUX2O14529 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
CUX2O14529 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
CUX2O14529 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC36.99■■■■□ 3.51
CUX2O14529 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC36.99■■■■□ 3.51
CUX2O14529 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC36.99■■■■□ 3.51
CUX2O14529 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC36.99■■■■□ 3.51
CUX2O14529 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC36.99■■■■□ 3.51
CUX2O14529 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC36.98■■■■□ 3.51
CUX2O14529 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC36.98■■■■□ 3.51
CUX2O14529 AC055733.4-201ENST00000638462 1354 ntBASIC36.98■■■■□ 3.51
CUX2O14529 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
CUX2O14529 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC36.98■■■■□ 3.51
CUX2O14529 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC36.98■■■■□ 3.51
CUX2O14529 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC36.98■■■■□ 3.51
CUX2O14529 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC36.98■■■■□ 3.51
CUX2O14529 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC36.98■■■■□ 3.51
CUX2O14529 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC36.98■■■■□ 3.51
CUX2O14529 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC36.98■■■■□ 3.51
CUX2O14529 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC36.98■■■■□ 3.51
CUX2O14529 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC36.98■■■■□ 3.51
CUX2O14529 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC36.97■■■■□ 3.51
CUX2O14529 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
CUX2O14529 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC36.97■■■■□ 3.51
CUX2O14529 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC36.97■■■■□ 3.51
CUX2O14529 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC36.97■■■■□ 3.51
CUX2O14529 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC36.97■■■■□ 3.51
CUX2O14529 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC36.97■■■■□ 3.51
CUX2O14529 HLA-B-256ENST00000639848 1089 ntBASIC36.97■■■■□ 3.51
CUX2O14529 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC36.97■■■■□ 3.51
CUX2O14529 KRT17P3-201ENST00000420566 1262 ntBASIC36.96■■■■□ 3.51
CUX2O14529 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC36.96■■■■□ 3.51
CUX2O14529 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC36.96■■■■□ 3.51
CUX2O14529 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
CUX2O14529 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC36.96■■■■□ 3.51
CUX2O14529 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC36.96■■■■□ 3.51
CUX2O14529 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
CUX2O14529 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
CUX2O14529 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC36.95■■■■□ 3.51
CUX2O14529 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
CUX2O14529 AC004687.1-201ENST00000579003 1625 ntBASIC36.95■■■■□ 3.51
CUX2O14529 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC36.95■■■■□ 3.5
CUX2O14529 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
CUX2O14529 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC36.94■■■■□ 3.5
CUX2O14529 AL049637.2-201ENST00000641778 930 ntBASIC36.94■■■■□ 3.5
CUX2O14529 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC36.94■■■■□ 3.5
CUX2O14529 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC36.94■■■■□ 3.5
CUX2O14529 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
CUX2O14529 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC36.93■■■■□ 3.5
CUX2O14529 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC36.93■■■■□ 3.5
CUX2O14529 AL355075.4-201ENST00000554988 638 ntBASIC36.93■■■■□ 3.5
CUX2O14529 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC36.93■■■■□ 3.5
CUX2O14529 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC36.93■■■■□ 3.5
CUX2O14529 AC092865.7-201ENST00000641832 219 ntBASIC36.93■■■■□ 3.5
CUX2O14529 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC36.92■■■■□ 3.5
CUX2O14529 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC36.92■■■■□ 3.5
CUX2O14529 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC36.91■■■■□ 3.5
CUX2O14529 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC36.91■■■■□ 3.5
CUX2O14529 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
CUX2O14529 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC36.91■■■■□ 3.5
CUX2O14529 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
CUX2O14529 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC36.91■■■■□ 3.5
CUX2O14529 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC36.91■■■■□ 3.5
CUX2O14529 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC36.9■■■■□ 3.5
CUX2O14529 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
CUX2O14529 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC36.9■■■■□ 3.5
CUX2O14529 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
CUX2O14529 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC36.9■■■■□ 3.5
CUX2O14529 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC36.9■■■■□ 3.5
CUX2O14529 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC36.9■■■■□ 3.5
CUX2O14529 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
CUX2O14529 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
CUX2O14529 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC36.89■■■■□ 3.5
CUX2O14529 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC36.89■■■■□ 3.5
CUX2O14529 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC36.89■■■■□ 3.5
CUX2O14529 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC36.88■■■■□ 3.5
CUX2O14529 NAA20-201ENST00000310450 920 ntTSL 2 BASIC36.88■■■■□ 3.5
CUX2O14529 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC36.88■■■■□ 3.5
CUX2O14529 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.5
CUX2O14529 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC36.88■■■■□ 3.49
CUX2O14529 CRAT-202ENST00000393384 973 ntTSL 2 BASIC36.88■■■■□ 3.49
CUX2O14529 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC36.88■■■■□ 3.49
CUX2O14529 NME3-204ENST00000563498 920 ntTSL 2 BASIC36.88■■■■□ 3.49
CUX2O14529 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC36.88■■■■□ 3.49
CUX2O14529 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC36.88■■■■□ 3.49
CUX2O14529 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC36.88■■■■□ 3.49
CUX2O14529 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC36.88■■■■□ 3.49
CUX2O14529 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC36.88■■■■□ 3.49
CUX2O14529 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms