Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.46■□□□□ 0.87
SLC28A1O00337 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.45■□□□□ 0.86
SLC28A1O00337 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC28A1O00337 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC28A1O00337 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC28A1O00337 BX842568.3-201ENST00000418104 571 ntBASIC20.45■□□□□ 0.86
SLC28A1O00337 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.45■□□□□ 0.86
SLC28A1O00337 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.45■□□□□ 0.86
SLC28A1O00337 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SLC28A1O00337 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.45■□□□□ 0.86
SLC28A1O00337 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.45■□□□□ 0.86
SLC28A1O00337 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.45■□□□□ 0.86
SLC28A1O00337 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.45■□□□□ 0.86
SLC28A1O00337 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
SLC28A1O00337 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SLC28A1O00337 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SLC28A1O00337 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC28A1O00337 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SLC28A1O00337 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.44■□□□□ 0.86
SLC28A1O00337 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.44■□□□□ 0.86
SLC28A1O00337 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
SLC28A1O00337 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SLC28A1O00337 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC28A1O00337 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SLC28A1O00337 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.44■□□□□ 0.86
SLC28A1O00337 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.44■□□□□ 0.86
SLC28A1O00337 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.44■□□□□ 0.86
SLC28A1O00337 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SLC28A1O00337 AL024507.2-201ENST00000606070 2574 ntBASIC20.44■□□□□ 0.86
SLC28A1O00337 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC28A1O00337 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SLC28A1O00337 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SLC28A1O00337 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.44■□□□□ 0.86
SLC28A1O00337 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
SLC28A1O00337 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.43■□□□□ 0.86
SLC28A1O00337 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC28A1O00337 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC28A1O00337 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC28A1O00337 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SLC28A1O00337 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.43■□□□□ 0.86
SLC28A1O00337 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SLC28A1O00337 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC28A1O00337 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SLC28A1O00337 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SLC28A1O00337 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SLC28A1O00337 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.43■□□□□ 0.86
SLC28A1O00337 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC28A1O00337 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.43■□□□□ 0.86
SLC28A1O00337 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SLC28A1O00337 AP006587.3-201ENST00000525742 1516 ntBASIC20.43■□□□□ 0.86
SLC28A1O00337 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
SLC28A1O00337 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.42■□□□□ 0.86
SLC28A1O00337 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SLC28A1O00337 UNC93B3-201ENST00000308076 687 ntBASIC20.42■□□□□ 0.86
SLC28A1O00337 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.42■□□□□ 0.86
SLC28A1O00337 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.42■□□□□ 0.86
SLC28A1O00337 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SLC28A1O00337 MIR4767-201ENST00000582827 78 ntBASIC20.42■□□□□ 0.86
SLC28A1O00337 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SLC28A1O00337 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SLC28A1O00337 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC28A1O00337 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SLC28A1O00337 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SLC28A1O00337 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC28A1O00337 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC28A1O00337 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC28A1O00337 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SLC28A1O00337 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SLC28A1O00337 SMUG1P1-201ENST00000590640 811 ntBASIC20.41■□□□□ 0.86
SLC28A1O00337 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SLC28A1O00337 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.41■□□□□ 0.86
SLC28A1O00337 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.41■□□□□ 0.86
SLC28A1O00337 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.41■□□□□ 0.86
SLC28A1O00337 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SLC28A1O00337 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SLC28A1O00337 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC28A1O00337 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC28A1O00337 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SLC28A1O00337 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SLC28A1O00337 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.4■□□□□ 0.86
SLC28A1O00337 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SLC28A1O00337 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
SLC28A1O00337 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
SLC28A1O00337 AC133561.4-201ENST00000566112 224 ntBASIC20.4■□□□□ 0.86
SLC28A1O00337 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms