Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 AC024257.2-201ENST00000549699 147 ntBASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 AC104564.3-201ENST00000582367 638 ntBASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 AC135279.3-201ENST00000610945 1311 ntBASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 AC244015.2-201ENST00000616358 1861 ntBASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRAV4A0A0B4J268 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 AC233992.3-201ENST00000607491 485 ntBASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRAV4A0A0B4J268 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 PEMT-206ENST00000435340 960 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
TRAV4A0A0B4J268 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRAV4A0A0B4J268 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV4A0A0B4J268 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV4A0A0B4J268 TUB-203ENST00000534099 1759 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV4A0A0B4J268 AC126544.1-201ENST00000580842 1059 ntBASIC15.27■□□□□ 0.04
TRAV4A0A0B4J268 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV4A0A0B4J268 AP004607.7-201ENST00000527152 1677 ntBASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV4A0A0B4J268 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 AICDA-202ENST00000537228 667 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRAV4A0A0B4J268 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV4A0A0B4J268 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV4A0A0B4J268 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV4A0A0B4J268 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRAV4A0A0B4J268 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV4A0A0B4J268 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV4A0A0B4J268 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV4A0A0B4J268 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms