Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CCDC187A0A096LP49 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC187A0A096LP49 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC187A0A096LP49 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 BX276092.2-201ENST00000417668 665 ntBASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CCDC187A0A096LP49 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC187A0A096LP49 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.22■□□□□ 0.83
CCDC187A0A096LP49 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 AC097658.1-201ENST00000475555 843 ntBASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 RARRES2P4-201ENST00000514074 484 ntBASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC187A0A096LP49 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 PRORSD1P-201ENST00000295112 541 ntBASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC187A0A096LP49 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC187A0A096LP49 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms