Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TOMM20-201ENST00000366607 3387 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.533e-10■■■■□ 26.5
SF3B1O75533 HNRNPK-209ENST00000483135 900 ntTSL 26.9□□□□□ -1.33e-10■■■■□ 26.5
SF3B1O75533 ARRDC3-207ENST00000514284 531 ntTSL 44.01□□□□□ -1.773e-10■■■■□ 26.5
SF3B1O75533 TOMM20-203ENST00000473132 365 ntTSL 23.44□□□□□ -1.863e-10■■■■□ 26.5
SF3B1O75533 SLC3A2-209ENST00000537508 583 ntTSL 210.33□□□□□ -0.762e-7■■■■□ 26.5
SF3B1O75533 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC24.85■■□□□ 1.571e-6■■■■□ 26.5
SF3B1O75533 MIR17HG-203ENST00000582141 2845 ntTSL 1 (best)18■□□□□ 0.471e-6■■■■□ 26.5
SF3B1O75533 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC8.16□□□□□ -1.11e-6■■■■□ 26.5
SF3B1O75533 SRRM2-219ENST00000574340 579 ntTSL 319.08■□□□□ 0.659e-8■■■■□ 26.4
SF3B1O75533 STAG3L5P-PVRIG2P-PILRB-203ENST00000470714 868 ntTSL 318.23■□□□□ 0.516e-8■■■■□ 26.4
SF3B1O75533 STAG3L5P-PVRIG2P-PILRB-205ENST00000483329 819 ntTSL 513.33□□□□□ -0.286e-8■■■■□ 26.4
SF3B1O75533 RPL13-206ENST00000472354 631 ntTSL 311.98□□□□□ -0.493e-6■■■■□ 26.4
SF3B1O75533 SUN1-218ENST00000450881 513 ntTSL 415.75■□□□□ 0.112e-6■■■■□ 26.4
SF3B1O75533 ASNS-211ENST00000451771 562 ntTSL 220.95■□□□□ 0.945e-13■■■■□ 26.4
SF3B1O75533 ASNS-204ENST00000414884 584 ntTSL 220.89■□□□□ 0.935e-13■■■■□ 26.4
SF3B1O75533 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.76■□□□□ 0.915e-13■■■■□ 26.4
SF3B1O75533 AC079781.5-203ENST00000641315 2059 nt19.56■□□□□ 0.725e-13■■■■□ 26.4
SF3B1O75533 AC079781.5-201ENST00000641390 3211 nt18.74■□□□□ 0.595e-13■■■■□ 26.4
SF3B1O75533 ASNS-208ENST00000442734 828 ntTSL 217.12■□□□□ 0.335e-13■■■■□ 26.4
SF3B1O75533 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.225e-13■■■■□ 26.4
SF3B1O75533 ASNS-212ENST00000453600 573 ntTSL 315.63■□□□□ 0.095e-13■■■■□ 26.4
SF3B1O75533 AC079781.5-202ENST00000641784 3743 ntBASIC15.1■□□□□ 0.015e-13■■■■□ 26.4
SF3B1O75533 ASNS-203ENST00000394309 2289 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.465e-13■■■■□ 26.4
SF3B1O75533 ASNS-217ENST00000495255 1678 ntTSL 212.09□□□□□ -0.475e-13■■■■□ 26.4
SF3B1O75533 ASNS-205ENST00000422745 1865 ntTSL 5 BASIC10.66□□□□□ -0.75e-13■■■■□ 26.4
SF3B1O75533 ASNS-202ENST00000394308 1994 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.715e-13■■■■□ 26.4
SF3B1O75533 ASNS-210ENST00000448127 579 ntTSL 29.48□□□□□ -0.895e-13■■■■□ 26.4
SF3B1O75533 ASNS-213ENST00000454046 1947 ntTSL 58.78□□□□□ -15e-13■■■■□ 26.4
SF3B1O75533 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC8.13□□□□□ -1.115e-13■■■■□ 26.4
SF3B1O75533 ASNS-207ENST00000437657 745 ntTSL 58.12□□□□□ -1.115e-13■■■■□ 26.4
SF3B1O75533 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.59□□□□□ -1.355e-13■■■■□ 26.4
SF3B1O75533 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.573e-8■■■■□ 26.3
SF3B1O75533 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.09□□□□□ -1.444e-6■■■■□ 26.3
SF3B1O75533 ATF7IP2-215ENST00000568027 3406 ntTSL 1 (best)5.22□□□□□ -1.574e-6■■■■□ 26.3
SF3B1O75533 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.694e-6■■■■□ 26.3
SF3B1O75533 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC14.29□□□□□ -0.121e-6■■■■□ 26.3
SF3B1O75533 EIF4A2-201ENST00000323963 1919 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.735e-7■■■■□ 26.2
SF3B1O75533 EIF4A2-203ENST00000426808 1751 ntTSL 1 (best)7.42□□□□□ -1.225e-7■■■■□ 26.2
SF3B1O75533 EIF4A2-207ENST00000443963 1729 ntTSL 1 (best)7.33□□□□□ -1.245e-7■■■■□ 26.2
SF3B1O75533 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.325e-7■■■■□ 26.2
SF3B1O75533 EIF4A2-202ENST00000425053 1977 ntTSL 56.19□□□□□ -1.425e-7■■■■□ 26.2
SF3B1O75533 EIF4A2-219ENST00000485101 5327 ntTSL 54.43□□□□□ -1.75e-7■■■■□ 26.2
SF3B1O75533 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.78■□□□□ 0.62e-6■■■■□ 26.2
SF3B1O75533 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.132e-6■■■■□ 26.2
SF3B1O75533 HSP90B1-203ENST00000548462 3032 ntTSL 211.9□□□□□ -0.512e-6■■■■□ 26.2
SF3B1O75533 FASN-211ENST00000637026 100 ntTSL 511.4□□□□□ -0.581e-6■■■■□ 26.2
SF3B1O75533 SON-201ENST00000300278 7477 ntTSL 1 (best) BASIC11.87□□□□□ -0.512e-6■■■■□ 26.2
SF3B1O75533 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.66■■■□□ 2.664e-6■■■■□ 26.1
SF3B1O75533 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.33■■■□□ 2.614e-6■■■■□ 26.1
SF3B1O75533 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.99■■■□□ 2.554e-6■■■■□ 26.1
SF3B1O75533 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.99■■■□□ 2.554e-6■■■■□ 26.1
SF3B1O75533 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.43■■□□□ 1.344e-6■■■■□ 26.1
SF3B1O75533 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC22.24■■□□□ 1.154e-6■■■■□ 26.1
SF3B1O75533 TRIM28-204ENST00000594806 861 ntTSL 527.97■■■□□ 2.073e-6■■■■□ 26.1
SF3B1O75533 TRIM28-203ENST00000593582 533 ntTSL 316.74■□□□□ 0.273e-6■■■■□ 26.1
SF3B1O75533 RPL13-209ENST00000491523 698 ntTSL 324.55■■□□□ 1.523e-6■■■■□ 26.1
SF3B1O75533 RPL13-212ENST00000563749 2367 nt22.78■■□□□ 1.243e-6■■■■□ 26.1
SF3B1O75533 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.463e-6■■■■□ 26.1
SF3B1O75533 RPL13-207ENST00000484610 924 ntTSL 516.35■□□□□ 0.213e-6■■■■□ 26.1
SF3B1O75533 RPL13-211ENST00000563270 554 ntTSL 416.19■□□□□ 0.183e-6■■■■□ 26.1
SF3B1O75533 TRIM28-209ENST00000597423 733 ntTSL 316.2■□□□□ 0.184e-6■■■■□ 26.1
SF3B1O75533 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.524e-6■■■■□ 26.1
SF3B1O75533 PYGL-203ENST00000530336 1459 ntTSL 1 (best)14.02□□□□□ -0.174e-6■■■■□ 26.1
SF3B1O75533 PYGL-206ENST00000544180 2696 ntTSL 2 BASIC13.31□□□□□ -0.284e-6■■■■□ 26.1
SF3B1O75533 PYGL-205ENST00000532462 2711 ntTSL 1 (best) BASIC12.11□□□□□ -0.474e-6■■■■□ 26.1
SF3B1O75533 RBMX-206ENST00000561733 837 ntTSL 311.18□□□□□ -0.623e-7■■■■□ 26.1
SF3B1O75533 FASN-208ENST00000635733 100 ntTSL 59.32□□□□□ -0.921e-6■■■■□ 26
SF3B1O75533 PDCD6IP-217ENST00000498147 802 ntTSL 320.62■□□□□ 0.891e-8■■■■□ 26
SF3B1O75533 PDCD6IP-203ENST00000413073 566 ntTSL 419.94■□□□□ 0.781e-8■■■■□ 26
SF3B1O75533 PDCD6IP-204ENST00000430877 582 ntTSL 317.8■□□□□ 0.441e-8■■■■□ 26
SF3B1O75533 PDCD6IP-205ENST00000435909 587 ntTSL 517.65■□□□□ 0.421e-8■■■■□ 26
SF3B1O75533 PDCD6IP-210ENST00000477798 587 ntTSL 415.92■□□□□ 0.141e-8■■■■□ 26
SF3B1O75533 PDCD6IP-212ENST00000484478 596 ntTSL 42.56□□□□□ -21e-8■■■■□ 26
SF3B1O75533 SNHG3-201ENST00000413987 2201 ntTSL 1 (best)9.28□□□□□ -0.924e-6■■■■□ 26
SF3B1O75533 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.927e-7■■■■□ 25.9
SF3B1O75533 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.587e-7■■■■□ 25.9
SF3B1O75533 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.247e-7■■■■□ 25.9
SF3B1O75533 MORF4L2-213ENST00000488331 326 ntTSL 22.94□□□□□ -1.944e-7■■■■□ 25.9
SF3B1O75533 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.321e-6■■■■□ 25.9
SF3B1O75533 BMP2K-202ENST00000389010 2741 ntTSL 1 (best)21.59■■□□□ 1.051e-6■■■■□ 25.9
SF3B1O75533 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.581e-6■■■■□ 25.9
SF3B1O75533 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.241e-6■■■■□ 25.9
SF3B1O75533 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.791e-6■■■■□ 25.8
SF3B1O75533 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.1■■□□□ 1.771e-6■■■■□ 25.8
SF3B1O75533 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC25.89■■□□□ 1.741e-6■■■■□ 25.8
SF3B1O75533 AC090360.1-202ENST00000562771 1032 ntAPPRIS P5 TSL 425.89■■□□□ 1.741e-6■■■■□ 25.8
SF3B1O75533 RBFA-203ENST00000586847 566 ntTSL 424.52■■□□□ 1.521e-6■■■■□ 25.8
SF3B1O75533 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.23■■□□□ 1.471e-6■■■■□ 25.8
SF3B1O75533 YWHAZ-213ENST00000492736 681 ntTSL 323.8■■□□□ 1.41e-6■■■■□ 25.8
SF3B1O75533 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.081e-6■■■■□ 25.8
SF3B1O75533 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.38■■□□□ 1.011e-6■■■■□ 25.8
SF3B1O75533 UBA6-205ENST00000506571 385 ntTSL 220.89■□□□□ 0.931e-6■■■■□ 25.8
SF3B1O75533 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.881e-6■■■■□ 25.8
SF3B1O75533 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.761e-6■■■■□ 25.8
SF3B1O75533 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.67■□□□□ 0.741e-6■■■■□ 25.8
SF3B1O75533 KCNN4-203ENST00000598836 1003 ntTSL 519.39■□□□□ 0.691e-6■■■■□ 25.8
SF3B1O75533 KCNN4-208ENST00000601549 1093 ntTSL 319.37■□□□□ 0.691e-6■■■■□ 25.8
SF3B1O75533 KRIT1-215ENST00000452773 665 ntTSL 219.29■□□□□ 0.682e-9■■■■□ 25.8
SF3B1O75533 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.681e-6■■■■□ 25.8
SF3B1O75533 KRIT1-224ENST00000489087 512 ntTSL 419.13■□□□□ 0.652e-9■■■■□ 25.8
Retrieved 100 of 46,956 protein–RNA pairs in 3310.5 ms