Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
SHANK1Q9Y566 AC016405.3-201ENST00000607710 860 ntBASIC19.36■□□□□ 0.69
SHANK1Q9Y566 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.36■□□□□ 0.69
SHANK1Q9Y566 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK1Q9Y566 DUSP8P3-201ENST00000399571 1760 ntBASIC19.36■□□□□ 0.69
SHANK1Q9Y566 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.36■□□□□ 0.69
SHANK1Q9Y566 DUSP5P2-201ENST00000426873 1033 ntBASIC19.36■□□□□ 0.69
SHANK1Q9Y566 AC007322.4-201ENST00000509611 723 ntBASIC19.36■□□□□ 0.69
SHANK1Q9Y566 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.36■□□□□ 0.69
SHANK1Q9Y566 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.36■□□□□ 0.69
SHANK1Q9Y566 MYC-209ENST00000641252 345 ntBASIC19.36■□□□□ 0.69
SHANK1Q9Y566 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 RARRES2P4-201ENST00000514074 484 ntBASIC19.35■□□□□ 0.69
SHANK1Q9Y566 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 AC142381.4-202ENST00000563973 229 ntBASIC19.35■□□□□ 0.69
SHANK1Q9Y566 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.35■□□□□ 0.69
SHANK1Q9Y566 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHANK1Q9Y566 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.33■□□□□ 0.69
SHANK1Q9Y566 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.33■□□□□ 0.69
SHANK1Q9Y566 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.33■□□□□ 0.69
SHANK1Q9Y566 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.33■□□□□ 0.69
SHANK1Q9Y566 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.33■□□□□ 0.69
SHANK1Q9Y566 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHANK1Q9Y566 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.33■□□□□ 0.69
SHANK1Q9Y566 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.33■□□□□ 0.68
SHANK1Q9Y566 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.32■□□□□ 0.68
SHANK1Q9Y566 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SHANK1Q9Y566 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK1Q9Y566 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms