Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLN6Q9NWW5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLN6Q9NWW5 OXCT2P1-201ENST00000447263 1535 ntBASIC19.41■□□□□ 0.7
CLN6Q9NWW5 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.4■□□□□ 0.7
CLN6Q9NWW5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLN6Q9NWW5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CLN6Q9NWW5 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 AC009102.2-201ENST00000606772 1639 ntBASIC19.39■□□□□ 0.69
CLN6Q9NWW5 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 LINC01006-201ENST00000333319 2292 ntBASIC19.39■□□□□ 0.69
CLN6Q9NWW5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLN6Q9NWW5 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 AC079089.2-201ENST00000531211 1277 ntBASIC19.38■□□□□ 0.69
CLN6Q9NWW5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 AC026471.6-201ENST00000622954 1905 ntBASIC19.38■□□□□ 0.69
CLN6Q9NWW5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLN6Q9NWW5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLN6Q9NWW5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms