Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC25.38■■□□□ 1.65
DDX4Q9NQI0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC25.38■■□□□ 1.65
DDX4Q9NQI0 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
DDX4Q9NQI0 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 APTR-205ENST00000447009 902 ntTSL 2 BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC25.37■■□□□ 1.65
DDX4Q9NQI0 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
DDX4Q9NQI0 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 ABHD17AP1-201ENST00000358206 933 ntBASIC25.35■■□□□ 1.65
DDX4Q9NQI0 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 SLC7A5P1-201ENST00000568957 537 ntBASIC25.35■■□□□ 1.65
DDX4Q9NQI0 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
DDX4Q9NQI0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC25.34■■□□□ 1.65
DDX4Q9NQI0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
DDX4Q9NQI0 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
DDX4Q9NQI0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC25.33■■□□□ 1.65
DDX4Q9NQI0 TERF1P5-201ENST00000477545 1207 ntBASIC25.33■■□□□ 1.65
DDX4Q9NQI0 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
DDX4Q9NQI0 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
DDX4Q9NQI0 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
DDX4Q9NQI0 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
DDX4Q9NQI0 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC25.33■■□□□ 1.65
DDX4Q9NQI0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC25.33■■□□□ 1.64
DDX4Q9NQI0 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
DDX4Q9NQI0 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 C9orf163-202ENST00000624034 2573 ntBASIC25.32■■□□□ 1.64
DDX4Q9NQI0 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 RNF146-206ENST00000480444 843 ntTSL 2 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 PLLP-204ENST00000569059 665 ntTSL 3 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
DDX4Q9NQI0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 AC068338.2-201ENST00000563278 1430 ntBASIC25.31■■□□□ 1.64
DDX4Q9NQI0 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 AC098934.4-201ENST00000564127 592 ntBASIC25.31■■□□□ 1.64
DDX4Q9NQI0 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
DDX4Q9NQI0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms