Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
USP42Q9H9J4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC27.29■■□□□ 1.96
USP42Q9H9J4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
USP42Q9H9J4 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC27.28■■□□□ 1.96
USP42Q9H9J4 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP42Q9H9J4 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP42Q9H9J4 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP42Q9H9J4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC27.28■■□□□ 1.96
USP42Q9H9J4 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC27.28■■□□□ 1.96
USP42Q9H9J4 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP42Q9H9J4 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
USP42Q9H9J4 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USP42Q9H9J4 ME2-208ENST00000638937 2471 ntTSL 5 BASIC27.27■■□□□ 1.96
USP42Q9H9J4 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
USP42Q9H9J4 PRORSD1P-201ENST00000295112 541 ntBASIC27.27■■□□□ 1.96
USP42Q9H9J4 MIPEPP3-201ENST00000412105 444 ntBASIC27.27■■□□□ 1.96
USP42Q9H9J4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC27.27■■□□□ 1.96
USP42Q9H9J4 RNA5SP413-201ENST00000516373 109 ntBASIC27.27■■□□□ 1.96
USP42Q9H9J4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC27.27■■□□□ 1.96
USP42Q9H9J4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC27.27■■□□□ 1.96
USP42Q9H9J4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC27.27■■□□□ 1.96
USP42Q9H9J4 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
USP42Q9H9J4 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
USP42Q9H9J4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
USP42Q9H9J4 PPP1R14BP2-201ENST00000426284 444 ntBASIC27.26■■□□□ 1.95
USP42Q9H9J4 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
USP42Q9H9J4 TERF1P5-201ENST00000477545 1207 ntBASIC27.26■■□□□ 1.95
USP42Q9H9J4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC27.26■■□□□ 1.95
USP42Q9H9J4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC27.26■■□□□ 1.95
USP42Q9H9J4 SLC7A5P1-201ENST00000568957 537 ntBASIC27.26■■□□□ 1.95
USP42Q9H9J4 AC068473.5-201ENST00000616428 2072 ntBASIC27.26■■□□□ 1.95
USP42Q9H9J4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC27.26■■□□□ 1.95
USP42Q9H9J4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USP42Q9H9J4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USP42Q9H9J4 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC27.25■■□□□ 1.95
USP42Q9H9J4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
USP42Q9H9J4 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
USP42Q9H9J4 FXN-202ENST00000396364 980 ntTSL 5 BASIC27.24■■□□□ 1.95
USP42Q9H9J4 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
USP42Q9H9J4 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC27.24■■□□□ 1.95
USP42Q9H9J4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
USP42Q9H9J4 AC007322.4-201ENST00000509611 723 ntBASIC27.24■■□□□ 1.95
USP42Q9H9J4 AC079089.2-201ENST00000531211 1277 ntBASIC27.24■■□□□ 1.95
USP42Q9H9J4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC27.24■■□□□ 1.95
USP42Q9H9J4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC27.24■■□□□ 1.95
USP42Q9H9J4 MKRN4P-201ENST00000444706 1521 ntBASIC27.24■■□□□ 1.95
USP42Q9H9J4 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
USP42Q9H9J4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC27.24■■□□□ 1.95
USP42Q9H9J4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
USP42Q9H9J4 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
USP42Q9H9J4 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
USP42Q9H9J4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC27.23■■□□□ 1.95
USP42Q9H9J4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
USP42Q9H9J4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC27.23■■□□□ 1.95
USP42Q9H9J4 KRT18P29-201ENST00000397031 1267 ntBASIC27.23■■□□□ 1.95
USP42Q9H9J4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
USP42Q9H9J4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC27.23■■□□□ 1.95
USP42Q9H9J4 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC27.23■■□□□ 1.95
USP42Q9H9J4 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP42Q9H9J4 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP42Q9H9J4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP42Q9H9J4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USP42Q9H9J4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC27.23■■□□□ 1.95
USP42Q9H9J4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
USP42Q9H9J4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP42Q9H9J4 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC27.22■■□□□ 1.95
USP42Q9H9J4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
USP42Q9H9J4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
USP42Q9H9J4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP42Q9H9J4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP42Q9H9J4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USP42Q9H9J4 EEF1DP3-203ENST00000566025 782 ntBASIC27.21■■□□□ 1.95
USP42Q9H9J4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC27.21■■□□□ 1.95
USP42Q9H9J4 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC27.21■■□□□ 1.95
USP42Q9H9J4 AP004607.7-201ENST00000527152 1677 ntBASIC27.21■■□□□ 1.95
USP42Q9H9J4 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USP42Q9H9J4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC27.21■■□□□ 1.95
USP42Q9H9J4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC27.21■■□□□ 1.95
USP42Q9H9J4 C9orf163-202ENST00000624034 2573 ntBASIC27.21■■□□□ 1.95
USP42Q9H9J4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USP42Q9H9J4 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.95
USP42Q9H9J4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
USP42Q9H9J4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC27.2■■□□□ 1.95
USP42Q9H9J4 BET1L-204ENST00000410108 637 ntTSL 3 BASIC27.2■■□□□ 1.95
USP42Q9H9J4 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC27.2■■□□□ 1.95
USP42Q9H9J4 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.95
USP42Q9H9J4 AC092118.2-201ENST00000613495 667 ntBASIC27.2■■□□□ 1.95
USP42Q9H9J4 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.95
USP42Q9H9J4 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
USP42Q9H9J4 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC27.2■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms