Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM56Q9BRZ2 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 SLC47A1P1-202ENST00000449666 945 ntBASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
TRIM56Q9BRZ2 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.7■■□□□ 1.06
TRIM56Q9BRZ2 Z98882.1-201ENST00000622160 2253 ntBASIC21.7■■□□□ 1.06
TRIM56Q9BRZ2 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM56Q9BRZ2 AC092171.4-201ENST00000609130 632 ntBASIC21.7■■□□□ 1.06
TRIM56Q9BRZ2 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.7■■□□□ 1.06
TRIM56Q9BRZ2 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.7■■□□□ 1.06
TRIM56Q9BRZ2 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.7■■□□□ 1.06
TRIM56Q9BRZ2 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM56Q9BRZ2 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 AC136469.2-201ENST00000623944 1028 ntBASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM56Q9BRZ2 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 AC010141.3-201ENST00000456659 717 ntBASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.67■■□□□ 1.06
TRIM56Q9BRZ2 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 AL136116.3-201ENST00000402907 1138 ntBASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
TRIM56Q9BRZ2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM56Q9BRZ2 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.06
TRIM56Q9BRZ2 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.64■■□□□ 1.06
TRIM56Q9BRZ2 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.64■■□□□ 1.06
TRIM56Q9BRZ2 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 AL138724.1-201ENST00000606771 1088 ntBASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
TRIM56Q9BRZ2 OXCT2P1-201ENST00000447263 1535 ntBASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms