Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LRCH3Q96II8 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRCH3Q96II8 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
LRCH3Q96II8 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRCH3Q96II8 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.27■■□□□ 1.32
LRCH3Q96II8 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRCH3Q96II8 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRCH3Q96II8 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.27■■□□□ 1.32
LRCH3Q96II8 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LRCH3Q96II8 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.27■■□□□ 1.32
LRCH3Q96II8 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
LRCH3Q96II8 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LRCH3Q96II8 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LRCH3Q96II8 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LRCH3Q96II8 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 PPOX-219ENST00000544598 813 ntTSL 2 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRCH3Q96II8 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.26■■□□□ 1.31
LRCH3Q96II8 AC004687.1-201ENST00000579003 1625 ntBASIC23.26■■□□□ 1.31
LRCH3Q96II8 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.25■■□□□ 1.31
LRCH3Q96II8 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRCH3Q96II8 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRCH3Q96II8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC23.25■■□□□ 1.31
LRCH3Q96II8 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
LRCH3Q96II8 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC23.25■■□□□ 1.31
LRCH3Q96II8 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.25■■□□□ 1.31
LRCH3Q96II8 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC23.25■■□□□ 1.31
LRCH3Q96II8 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.25■■□□□ 1.31
LRCH3Q96II8 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRCH3Q96II8 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRCH3Q96II8 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRCH3Q96II8 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LRCH3Q96II8 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.24■■□□□ 1.31
LRCH3Q96II8 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRCH3Q96II8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRCH3Q96II8 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC23.24■■□□□ 1.31
LRCH3Q96II8 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LRCH3Q96II8 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC23.24■■□□□ 1.31
LRCH3Q96II8 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23.24■■□□□ 1.31
LRCH3Q96II8 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.24■■□□□ 1.31
LRCH3Q96II8 AC138907.5-202ENST00000569484 235 ntBASIC23.24■■□□□ 1.31
LRCH3Q96II8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRCH3Q96II8 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRCH3Q96II8 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRCH3Q96II8 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
LRCH3Q96II8 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRCH3Q96II8 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
LRCH3Q96II8 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
LRCH3Q96II8 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRCH3Q96II8 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRCH3Q96II8 AC087499.1-201ENST00000418141 1075 ntBASIC23.23■■□□□ 1.31
LRCH3Q96II8 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
LRCH3Q96II8 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.23■■□□□ 1.31
LRCH3Q96II8 C2orf69P4-201ENST00000565394 541 ntBASIC23.23■■□□□ 1.31
LRCH3Q96II8 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.23■■□□□ 1.31
LRCH3Q96II8 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRCH3Q96II8 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.22■■□□□ 1.31
LRCH3Q96II8 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
LRCH3Q96II8 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.22■■□□□ 1.31
LRCH3Q96II8 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRCH3Q96II8 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRCH3Q96II8 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
LRCH3Q96II8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LRCH3Q96II8 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.22■■□□□ 1.31
LRCH3Q96II8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC23.22■■□□□ 1.31
LRCH3Q96II8 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC23.22■■□□□ 1.31
LRCH3Q96II8 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.22■■□□□ 1.31
LRCH3Q96II8 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRCH3Q96II8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRCH3Q96II8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRCH3Q96II8 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRCH3Q96II8 TMPOP1-202ENST00000424642 1267 ntBASIC23.21■■□□□ 1.31
LRCH3Q96II8 TSPY7P-201ENST00000431358 1114 ntBASIC23.21■■□□□ 1.31
LRCH3Q96II8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRCH3Q96II8 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC23.21■■□□□ 1.31
LRCH3Q96II8 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.21■■□□□ 1.31
LRCH3Q96II8 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRCH3Q96II8 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRCH3Q96II8 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
LRCH3Q96II8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.2■■□□□ 1.3
LRCH3Q96II8 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRCH3Q96II8 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
LRCH3Q96II8 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRCH3Q96II8 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
LRCH3Q96II8 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
LRCH3Q96II8 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LRCH3Q96II8 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
LRCH3Q96II8 AC010980.2-201ENST00000587099 1412 ntBASIC23.19■■□□□ 1.3
LRCH3Q96II8 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LRCH3Q96II8 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms