Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 DUX4L4-201ENST00000566884 1269 ntBASIC20.44■□□□□ 0.86
RNF220Q5VTB9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF220Q5VTB9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF220Q5VTB9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF220Q5VTB9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 UNC93B8-201ENST00000511903 705 ntBASIC20.41■□□□□ 0.86
RNF220Q5VTB9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
RNF220Q5VTB9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF220Q5VTB9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF220Q5VTB9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF220Q5VTB9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF220Q5VTB9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF220Q5VTB9 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.4■□□□□ 0.86
RNF220Q5VTB9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF220Q5VTB9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF220Q5VTB9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.4■□□□□ 0.86
RNF220Q5VTB9 MIR6724-1-201ENST00000616420 92 ntBASIC20.4■□□□□ 0.86
RNF220Q5VTB9 MIR6724-2-201ENST00000616483 92 ntBASIC20.4■□□□□ 0.86
RNF220Q5VTB9 MIR6724-4-201ENST00000617390 92 ntBASIC20.4■□□□□ 0.86
RNF220Q5VTB9 MIR6724-3-201ENST00000622482 92 ntBASIC20.4■□□□□ 0.86
RNF220Q5VTB9 AC009086.3-201ENST00000623486 1008 ntBASIC20.4■□□□□ 0.86
RNF220Q5VTB9 C17orf82-201ENST00000623772 1530 ntBASIC20.4■□□□□ 0.86
RNF220Q5VTB9 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF220Q5VTB9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
RNF220Q5VTB9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
RNF220Q5VTB9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF220Q5VTB9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF220Q5VTB9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RNF220Q5VTB9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RNF220Q5VTB9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.39■□□□□ 0.86
RNF220Q5VTB9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
RNF220Q5VTB9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF220Q5VTB9 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
RNF220Q5VTB9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF220Q5VTB9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF220Q5VTB9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms