Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL8A1P27658 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
COL8A1P27658 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL8A1P27658 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL8A1P27658 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL8A1P27658 FAM197Y4-202ENST00000622692 608 ntBASIC18.7■□□□□ 0.58
COL8A1P27658 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.7■□□□□ 0.58
COL8A1P27658 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
COL8A1P27658 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL8A1P27658 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
COL8A1P27658 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL8A1P27658 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.69■□□□□ 0.58
COL8A1P27658 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL8A1P27658 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL8A1P27658 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL8A1P27658 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL8A1P27658 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL8A1P27658 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL8A1P27658 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.69■□□□□ 0.58
COL8A1P27658 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
COL8A1P27658 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.69■□□□□ 0.58
COL8A1P27658 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.69■□□□□ 0.58
COL8A1P27658 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL8A1P27658 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.69■□□□□ 0.58
COL8A1P27658 Z99916.2-201ENST00000604037 246 ntBASIC18.69■□□□□ 0.58
COL8A1P27658 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.69■□□□□ 0.58
COL8A1P27658 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.69■□□□□ 0.58
COL8A1P27658 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL8A1P27658 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
COL8A1P27658 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL8A1P27658 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.68■□□□□ 0.58
COL8A1P27658 AC093323.1-202ENST00000635031 2045 ntBASIC18.68■□□□□ 0.58
COL8A1P27658 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL8A1P27658 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL8A1P27658 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
COL8A1P27658 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.68■□□□□ 0.58
COL8A1P27658 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
COL8A1P27658 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.68■□□□□ 0.58
COL8A1P27658 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.68■□□□□ 0.58
COL8A1P27658 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.68■□□□□ 0.58
COL8A1P27658 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.68■□□□□ 0.58
COL8A1P27658 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL8A1P27658 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL8A1P27658 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL8A1P27658 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.67■□□□□ 0.58
COL8A1P27658 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
COL8A1P27658 AC007322.4-201ENST00000509611 723 ntBASIC18.67■□□□□ 0.58
COL8A1P27658 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.67■□□□□ 0.58
COL8A1P27658 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.67■□□□□ 0.58
COL8A1P27658 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.67■□□□□ 0.58
COL8A1P27658 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.67■□□□□ 0.58
COL8A1P27658 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.67■□□□□ 0.58
COL8A1P27658 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.67■□□□□ 0.58
COL8A1P27658 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.67■□□□□ 0.58
COL8A1P27658 AC055733.4-201ENST00000638462 1354 ntBASIC18.67■□□□□ 0.58
COL8A1P27658 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL8A1P27658 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.66■□□□□ 0.58
COL8A1P27658 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL8A1P27658 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL8A1P27658 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.66■□□□□ 0.58
COL8A1P27658 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.66■□□□□ 0.58
COL8A1P27658 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.66■□□□□ 0.58
COL8A1P27658 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.66■□□□□ 0.58
COL8A1P27658 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL8A1P27658 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL8A1P27658 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
COL8A1P27658 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.65■□□□□ 0.58
COL8A1P27658 RPPH1-201ENST00000516869 333 ntBASIC18.65■□□□□ 0.58
COL8A1P27658 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL8A1P27658 C1QBPP2-201ENST00000528754 825 ntBASIC18.65■□□□□ 0.58
COL8A1P27658 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.65■□□□□ 0.58
COL8A1P27658 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
COL8A1P27658 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL8A1P27658 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL8A1P27658 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL8A1P27658 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL8A1P27658 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.64■□□□□ 0.57
COL8A1P27658 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL8A1P27658 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL8A1P27658 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.64■□□□□ 0.57
COL8A1P27658 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.64■□□□□ 0.57
COL8A1P27658 AC079630.1-202ENST00000618127 1840 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms