Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL5A3P25940 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC27.29■■□□□ 1.96
COL5A3P25940 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC27.29■■□□□ 1.96
COL5A3P25940 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC27.29■■□□□ 1.96
COL5A3P25940 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL5A3P25940 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL5A3P25940 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL5A3P25940 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL5A3P25940 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL5A3P25940 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC27.28■■□□□ 1.96
COL5A3P25940 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC27.28■■□□□ 1.96
COL5A3P25940 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC27.28■■□□□ 1.96
COL5A3P25940 AC091874.3-201ENST00000512672 1195 ntBASIC27.28■■□□□ 1.96
COL5A3P25940 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC27.28■■□□□ 1.96
COL5A3P25940 RBM17P2-201ENST00000616397 1405 ntBASIC27.28■■□□□ 1.96
COL5A3P25940 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL5A3P25940 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC27.28■■□□□ 1.96
COL5A3P25940 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
COL5A3P25940 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL5A3P25940 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL5A3P25940 AL162412.1-201ENST00000567129 965 ntBASIC27.27■■□□□ 1.96
COL5A3P25940 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC27.27■■□□□ 1.96
COL5A3P25940 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC27.27■■□□□ 1.96
COL5A3P25940 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC27.27■■□□□ 1.96
COL5A3P25940 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC27.27■■□□□ 1.96
COL5A3P25940 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL5A3P25940 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL5A3P25940 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC27.27■■□□□ 1.96
COL5A3P25940 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC27.27■■□□□ 1.96
COL5A3P25940 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC27.27■■□□□ 1.96
COL5A3P25940 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
COL5A3P25940 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
COL5A3P25940 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL5A3P25940 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL5A3P25940 AC010980.2-201ENST00000587099 1412 ntBASIC27.26■■□□□ 1.95
COL5A3P25940 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL5A3P25940 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL5A3P25940 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC27.26■■□□□ 1.95
COL5A3P25940 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC27.26■■□□□ 1.95
COL5A3P25940 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC27.26■■□□□ 1.95
COL5A3P25940 KRT16P2-201ENST00000414673 1423 ntBASIC27.25■■□□□ 1.95
COL5A3P25940 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL5A3P25940 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
COL5A3P25940 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC27.25■■□□□ 1.95
COL5A3P25940 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC27.25■■□□□ 1.95
COL5A3P25940 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL5A3P25940 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL5A3P25940 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
COL5A3P25940 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL5A3P25940 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC27.24■■□□□ 1.95
COL5A3P25940 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
COL5A3P25940 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC27.24■■□□□ 1.95
COL5A3P25940 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL5A3P25940 THRA-202ENST00000394121 2260 ntTSL 2 BASIC27.24■■□□□ 1.95
COL5A3P25940 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL5A3P25940 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC27.24■■□□□ 1.95
COL5A3P25940 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
COL5A3P25940 INO80E-214ENST00000620599 515 ntTSL 2 BASIC27.24■■□□□ 1.95
COL5A3P25940 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL5A3P25940 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC27.23■■□□□ 1.95
COL5A3P25940 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
COL5A3P25940 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC27.23■■□□□ 1.95
COL5A3P25940 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC27.23■■□□□ 1.95
COL5A3P25940 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC27.23■■□□□ 1.95
COL5A3P25940 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL5A3P25940 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL5A3P25940 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL5A3P25940 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC27.23■■□□□ 1.95
COL5A3P25940 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC27.23■■□□□ 1.95
COL5A3P25940 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL5A3P25940 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC27.22■■□□□ 1.95
COL5A3P25940 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL5A3P25940 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL5A3P25940 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC27.22■■□□□ 1.95
COL5A3P25940 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC27.22■■□□□ 1.95
COL5A3P25940 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC27.22■■□□□ 1.95
COL5A3P25940 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC27.22■■□□□ 1.95
COL5A3P25940 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC27.22■■□□□ 1.95
COL5A3P25940 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL5A3P25940 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC27.22■■□□□ 1.95
COL5A3P25940 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC27.22■■□□□ 1.95
COL5A3P25940 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL5A3P25940 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
COL5A3P25940 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL5A3P25940 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC27.21■■□□□ 1.95
COL5A3P25940 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC27.21■■□□□ 1.95
COL5A3P25940 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC27.21■■□□□ 1.95
COL5A3P25940 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC27.21■■□□□ 1.95
COL5A3P25940 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC27.21■■□□□ 1.95
COL5A3P25940 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL5A3P25940 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
COL5A3P25940 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC27.21■■□□□ 1.95
COL5A3P25940 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC27.21■■□□□ 1.95
COL5A3P25940 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC27.21■■□□□ 1.95
COL5A3P25940 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC27.2■■□□□ 1.95
COL5A3P25940 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC27.2■■□□□ 1.94
COL5A3P25940 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
COL5A3P25940 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC27.2■■□□□ 1.94
COL5A3P25940 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL5A3P25940 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms