Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RPS2P52-201ENST00000469610 820 ntBASIC20.68■□□□□ 0.9
COL5A1P20908 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
COL5A1P20908 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.68■□□□□ 0.9
COL5A1P20908 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.68■□□□□ 0.9
COL5A1P20908 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A1P20908 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A1P20908 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A1P20908 PRORSD1P-201ENST00000295112 541 ntBASIC20.67■□□□□ 0.9
COL5A1P20908 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL5A1P20908 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
COL5A1P20908 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.67■□□□□ 0.9
COL5A1P20908 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.67■□□□□ 0.9
COL5A1P20908 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A1P20908 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A1P20908 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL5A1P20908 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
COL5A1P20908 AL162412.1-201ENST00000567129 965 ntBASIC20.67■□□□□ 0.9
COL5A1P20908 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A1P20908 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL5A1P20908 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.67■□□□□ 0.9
COL5A1P20908 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COL5A1P20908 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A1P20908 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A1P20908 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A1P20908 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A1P20908 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.66■□□□□ 0.9
COL5A1P20908 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.66■□□□□ 0.9
COL5A1P20908 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.66■□□□□ 0.9
COL5A1P20908 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.66■□□□□ 0.9
COL5A1P20908 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.66■□□□□ 0.9
COL5A1P20908 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A1P20908 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A1P20908 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL5A1P20908 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.65■□□□□ 0.9
COL5A1P20908 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.65■□□□□ 0.9
COL5A1P20908 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.65■□□□□ 0.9
COL5A1P20908 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A1P20908 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A1P20908 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.65■□□□□ 0.9
COL5A1P20908 KRT18P29-201ENST00000397031 1267 ntBASIC20.65■□□□□ 0.9
COL5A1P20908 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.65■□□□□ 0.9
COL5A1P20908 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.65■□□□□ 0.9
COL5A1P20908 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
COL5A1P20908 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
COL5A1P20908 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
COL5A1P20908 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A1P20908 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A1P20908 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL5A1P20908 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL5A1P20908 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL5A1P20908 AC093787.1-201ENST00000450396 207 ntBASIC20.64■□□□□ 0.9
COL5A1P20908 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.64■□□□□ 0.9
COL5A1P20908 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.64■□□□□ 0.9
COL5A1P20908 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL5A1P20908 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL5A1P20908 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
COL5A1P20908 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A1P20908 LINC00526-201ENST00000581067 1875 ntBASIC20.64■□□□□ 0.89
COL5A1P20908 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A1P20908 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A1P20908 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A1P20908 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
COL5A1P20908 BX276092.2-201ENST00000417668 665 ntBASIC20.64■□□□□ 0.89
COL5A1P20908 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A1P20908 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.64■□□□□ 0.89
COL5A1P20908 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.64■□□□□ 0.89
COL5A1P20908 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.64■□□□□ 0.89
COL5A1P20908 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL5A1P20908 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A1P20908 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A1P20908 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.63■□□□□ 0.89
COL5A1P20908 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A1P20908 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.63■□□□□ 0.89
COL5A1P20908 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.63■□□□□ 0.89
COL5A1P20908 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.63■□□□□ 0.89
COL5A1P20908 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A1P20908 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A1P20908 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.63■□□□□ 0.89
COL5A1P20908 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A1P20908 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A1P20908 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.63■□□□□ 0.89
COL5A1P20908 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.63■□□□□ 0.89
COL5A1P20908 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL5A1P20908 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.62■□□□□ 0.89
COL5A1P20908 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A1P20908 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.62■□□□□ 0.89
COL5A1P20908 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.62■□□□□ 0.89
COL5A1P20908 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL5A1P20908 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL5A1P20908 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL5A1P20908 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms