Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.72■□□□□ 0.91
PCNAP12004 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.72■□□□□ 0.91
PCNAP12004 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PCNAP12004 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
PCNAP12004 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.72■□□□□ 0.91
PCNAP12004 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PCNAP12004 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
PCNAP12004 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
PCNAP12004 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCNAP12004 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.72■□□□□ 0.91
PCNAP12004 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCNAP12004 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.72■□□□□ 0.91
PCNAP12004 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.72■□□□□ 0.91
PCNAP12004 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
PCNAP12004 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.71■□□□□ 0.91
PCNAP12004 AC099791.1-201ENST00000416440 715 ntBASIC20.71■□□□□ 0.91
PCNAP12004 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.71■□□□□ 0.91
PCNAP12004 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCNAP12004 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.7■□□□□ 0.9
PCNAP12004 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.7■□□□□ 0.9
PCNAP12004 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.7■□□□□ 0.9
PCNAP12004 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PCNAP12004 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.7■□□□□ 0.9
PCNAP12004 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PCNAP12004 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.7■□□□□ 0.9
PCNAP12004 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCNAP12004 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCNAP12004 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
PCNAP12004 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCNAP12004 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCNAP12004 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.69■□□□□ 0.9
PCNAP12004 AC027682.1-201ENST00000562846 899 ntBASIC20.69■□□□□ 0.9
PCNAP12004 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCNAP12004 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.69■□□□□ 0.9
PCNAP12004 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.69■□□□□ 0.9
PCNAP12004 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.69■□□□□ 0.9
PCNAP12004 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCNAP12004 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PCNAP12004 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCNAP12004 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCNAP12004 AC010542.4-201ENST00000563151 1910 ntBASIC20.68■□□□□ 0.9
PCNAP12004 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.68■□□□□ 0.9
PCNAP12004 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.68■□□□□ 0.9
PCNAP12004 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 EDA-201ENST00000338901 1233 ntBASIC20.68■□□□□ 0.9
PCNAP12004 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.68■□□□□ 0.9
PCNAP12004 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.68■□□□□ 0.9
PCNAP12004 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.68■□□□□ 0.9
PCNAP12004 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.68■□□□□ 0.9
PCNAP12004 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.68■□□□□ 0.9
PCNAP12004 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.68■□□□□ 0.9
PCNAP12004 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.68■□□□□ 0.9
PCNAP12004 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCNAP12004 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.67■□□□□ 0.9
PCNAP12004 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCNAP12004 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCNAP12004 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.67■□□□□ 0.9
PCNAP12004 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCNAP12004 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCNAP12004 AP001330.3-201ENST00000520123 633 ntBASIC20.67■□□□□ 0.9
PCNAP12004 IGHV3-19-201ENST00000521488 291 ntBASIC20.67■□□□□ 0.9
PCNAP12004 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.67■□□□□ 0.9
PCNAP12004 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.67■□□□□ 0.9
PCNAP12004 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.67■□□□□ 0.9
PCNAP12004 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCNAP12004 AL355001.2-201ENST00000620617 1191 ntBASIC20.67■□□□□ 0.9
PCNAP12004 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
PCNAP12004 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PCNAP12004 AC026310.3-201ENST00000625186 2373 ntBASIC20.67■□□□□ 0.9
PCNAP12004 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCNAP12004 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCNAP12004 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.66■□□□□ 0.9
PCNAP12004 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PCNAP12004 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms