Protein–RNA interactions for Protein: P0CG48

UBC, Polyubiquitin-C, humanhuman

Known RBP Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBCP0CG48 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBCP0CG48 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBCP0CG48 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
UBCP0CG48 GUSBP5-201ENST00000418136 578 ntBASIC18.66■□□□□ 0.58
UBCP0CG48 AL034346.1-201ENST00000568244 1277 ntBASIC18.66■□□□□ 0.58
UBCP0CG48 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
UBCP0CG48 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
UBCP0CG48 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBCP0CG48 AC026471.6-201ENST00000622954 1905 ntBASIC18.66■□□□□ 0.58
UBCP0CG48 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.66■□□□□ 0.58
UBCP0CG48 FEM1AP4-201ENST00000443167 1987 ntBASIC18.66■□□□□ 0.58
UBCP0CG48 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
UBCP0CG48 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
UBCP0CG48 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.65■□□□□ 0.58
UBCP0CG48 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
UBCP0CG48 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.65■□□□□ 0.58
UBCP0CG48 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.65■□□□□ 0.58
UBCP0CG48 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.65■□□□□ 0.58
UBCP0CG48 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.65■□□□□ 0.58
UBCP0CG48 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
UBCP0CG48 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.65■□□□□ 0.58
UBCP0CG48 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
UBCP0CG48 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.65■□□□□ 0.58
UBCP0CG48 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
UBCP0CG48 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
UBCP0CG48 OXCT2P1-201ENST00000447263 1535 ntBASIC18.64■□□□□ 0.58
UBCP0CG48 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
UBCP0CG48 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.58
UBCP0CG48 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
UBCP0CG48 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.64■□□□□ 0.57
UBCP0CG48 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
UBCP0CG48 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBCP0CG48 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.64■□□□□ 0.57
UBCP0CG48 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.64■□□□□ 0.57
UBCP0CG48 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
UBCP0CG48 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBCP0CG48 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.64■□□□□ 0.57
UBCP0CG48 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.64■□□□□ 0.57
UBCP0CG48 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBCP0CG48 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
UBCP0CG48 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.64■□□□□ 0.57
UBCP0CG48 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBCP0CG48 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
UBCP0CG48 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.64■□□□□ 0.57
UBCP0CG48 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
UBCP0CG48 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.64■□□□□ 0.57
UBCP0CG48 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
UBCP0CG48 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
UBCP0CG48 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBCP0CG48 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
UBCP0CG48 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBCP0CG48 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBCP0CG48 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
UBCP0CG48 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
UBCP0CG48 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.63■□□□□ 0.57
UBCP0CG48 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
UBCP0CG48 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
UBCP0CG48 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
UBCP0CG48 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
UBCP0CG48 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBCP0CG48 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
UBCP0CG48 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
UBCP0CG48 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBCP0CG48 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBCP0CG48 AL138724.1-201ENST00000606771 1088 ntBASIC18.62■□□□□ 0.57
UBCP0CG48 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.62■□□□□ 0.57
UBCP0CG48 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
UBCP0CG48 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
UBCP0CG48 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.61■□□□□ 0.57
UBCP0CG48 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
UBCP0CG48 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
UBCP0CG48 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
UBCP0CG48 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.61■□□□□ 0.57
UBCP0CG48 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBCP0CG48 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.61■□□□□ 0.57
UBCP0CG48 AL512631.2-201ENST00000604634 923 ntBASIC18.61■□□□□ 0.57
UBCP0CG48 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBCP0CG48 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
UBCP0CG48 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBCP0CG48 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
UBCP0CG48 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
UBCP0CG48 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.61■□□□□ 0.57
UBCP0CG48 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBCP0CG48 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBCP0CG48 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBCP0CG48 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBCP0CG48 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBCP0CG48 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBCP0CG48 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
UBCP0CG48 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.6■□□□□ 0.57
UBCP0CG48 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms