Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LDB3O75112 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LDB3O75112 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
LDB3O75112 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.09■□□□□ 0.81
LDB3O75112 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.09■□□□□ 0.81
LDB3O75112 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.09■□□□□ 0.81
LDB3O75112 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 AC123595.1-201ENST00000440769 1046 ntBASIC20.09■□□□□ 0.81
LDB3O75112 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.09■□□□□ 0.81
LDB3O75112 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.09■□□□□ 0.81
LDB3O75112 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 AC010542.4-201ENST00000563151 1910 ntBASIC20.09■□□□□ 0.81
LDB3O75112 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.09■□□□□ 0.81
LDB3O75112 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LDB3O75112 AC055733.4-201ENST00000638462 1354 ntBASIC20.08■□□□□ 0.81
LDB3O75112 LINC02228-203ENST00000641970 1355 ntBASIC20.08■□□□□ 0.81
LDB3O75112 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LDB3O75112 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LDB3O75112 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.08■□□□□ 0.81
LDB3O75112 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
LDB3O75112 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LDB3O75112 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LDB3O75112 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LDB3O75112 RARRES2P6-201ENST00000567333 442 ntBASIC20.08■□□□□ 0.81
LDB3O75112 FBXW4P1-201ENST00000426721 2239 ntBASIC20.08■□□□□ 0.8
LDB3O75112 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
LDB3O75112 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
LDB3O75112 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.08■□□□□ 0.8
LDB3O75112 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.08■□□□□ 0.8
LDB3O75112 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LDB3O75112 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LDB3O75112 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LDB3O75112 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.07■□□□□ 0.8
LDB3O75112 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
LDB3O75112 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LDB3O75112 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LDB3O75112 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LDB3O75112 MIR935-201ENST00000401179 91 ntBASIC20.07■□□□□ 0.8
LDB3O75112 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LDB3O75112 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
LDB3O75112 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LDB3O75112 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.07■□□□□ 0.8
LDB3O75112 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LDB3O75112 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
LDB3O75112 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
LDB3O75112 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LDB3O75112 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
LDB3O75112 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.06■□□□□ 0.8
LDB3O75112 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.06■□□□□ 0.8
LDB3O75112 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 AC097381.1-201ENST00000429019 1296 ntBASIC20.06■□□□□ 0.8
LDB3O75112 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.06■□□□□ 0.8
LDB3O75112 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
LDB3O75112 CCDC92B-201ENST00000575506 885 ntBASIC20.06■□□□□ 0.8
LDB3O75112 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LDB3O75112 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LDB3O75112 AC003102.1-202ENST00000563394 1796 ntBASIC20.06■□□□□ 0.8
LDB3O75112 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
LDB3O75112 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LDB3O75112 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LDB3O75112 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.05■□□□□ 0.8
LDB3O75112 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDB3O75112 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDB3O75112 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LDB3O75112 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LDB3O75112 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LDB3O75112 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LDB3O75112 AC026271.2-201ENST00000428091 497 ntBASIC20.05■□□□□ 0.8
LDB3O75112 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.05■□□□□ 0.8
LDB3O75112 MIR6821-201ENST00000617625 74 ntBASIC20.05■□□□□ 0.8
LDB3O75112 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDB3O75112 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDB3O75112 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
LDB3O75112 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.04■□□□□ 0.8
LDB3O75112 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 KRT18P14-201ENST00000534205 1250 ntBASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms