Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.81■□□□□ 0.92
CDX4O14627 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CDX4O14627 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CDX4O14627 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDX4O14627 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDX4O14627 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDX4O14627 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.81■□□□□ 0.92
CDX4O14627 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.81■□□□□ 0.92
CDX4O14627 AP003097.1-201ENST00000530657 1135 ntBASIC20.81■□□□□ 0.92
CDX4O14627 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.81■□□□□ 0.92
CDX4O14627 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.81■□□□□ 0.92
CDX4O14627 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CDX4O14627 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CDX4O14627 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.81■□□□□ 0.92
CDX4O14627 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.81■□□□□ 0.92
CDX4O14627 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CDX4O14627 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.81■□□□□ 0.92
CDX4O14627 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.8■□□□□ 0.92
CDX4O14627 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.8■□□□□ 0.92
CDX4O14627 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.8■□□□□ 0.92
CDX4O14627 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.8■□□□□ 0.92
CDX4O14627 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CDX4O14627 UBE2SP1-201ENST00000450587 669 ntBASIC20.8■□□□□ 0.92
CDX4O14627 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.8■□□□□ 0.92
CDX4O14627 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.8■□□□□ 0.92
CDX4O14627 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.8■□□□□ 0.92
CDX4O14627 AL162412.1-201ENST00000567129 965 ntBASIC20.8■□□□□ 0.92
CDX4O14627 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
CDX4O14627 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.8■□□□□ 0.92
CDX4O14627 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
CDX4O14627 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CDX4O14627 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX4O14627 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDX4O14627 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX4O14627 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX4O14627 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.79■□□□□ 0.92
CDX4O14627 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CDX4O14627 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CDX4O14627 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX4O14627 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CDX4O14627 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.79■□□□□ 0.92
CDX4O14627 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.79■□□□□ 0.92
CDX4O14627 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX4O14627 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CDX4O14627 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CDX4O14627 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CDX4O14627 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDX4O14627 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CDX4O14627 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CDX4O14627 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CDX4O14627 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CDX4O14627 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.78■□□□□ 0.92
CDX4O14627 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.78■□□□□ 0.92
CDX4O14627 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CDX4O14627 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.77■□□□□ 0.92
CDX4O14627 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.77■□□□□ 0.92
CDX4O14627 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDX4O14627 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.77■□□□□ 0.92
CDX4O14627 AL591742.1-201ENST00000604433 565 ntBASIC20.77■□□□□ 0.92
CDX4O14627 AL359736.2-201ENST00000621992 437 ntBASIC20.77■□□□□ 0.92
CDX4O14627 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CDX4O14627 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CDX4O14627 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
CDX4O14627 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.77■□□□□ 0.92
CDX4O14627 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CDX4O14627 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CDX4O14627 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.77■□□□□ 0.91
CDX4O14627 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CDX4O14627 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDX4O14627 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDX4O14627 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
CDX4O14627 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX4O14627 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX4O14627 LINC01124-201ENST00000409786 2117 ntBASIC20.76■□□□□ 0.91
CDX4O14627 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.76■□□□□ 0.91
CDX4O14627 AC120498.10-201ENST00000621827 505 ntBASIC20.76■□□□□ 0.91
CDX4O14627 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CDX4O14627 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.76■□□□□ 0.91
CDX4O14627 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX4O14627 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX4O14627 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX4O14627 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX4O14627 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms