Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.52■□□□□ 0.88
SLC28A1O00337 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.52■□□□□ 0.88
SLC28A1O00337 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.52■□□□□ 0.88
SLC28A1O00337 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC28A1O00337 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC28A1O00337 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.52■□□□□ 0.87
SLC28A1O00337 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A1O00337 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A1O00337 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A1O00337 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A1O00337 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC28A1O00337 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.51■□□□□ 0.87
SLC28A1O00337 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A1O00337 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SLC28A1O00337 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.51■□□□□ 0.87
SLC28A1O00337 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC28A1O00337 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
SLC28A1O00337 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC28A1O00337 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC28A1O00337 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC28A1O00337 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC28A1O00337 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC28A1O00337 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
SLC28A1O00337 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.5■□□□□ 0.87
SLC28A1O00337 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.5■□□□□ 0.87
SLC28A1O00337 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.5■□□□□ 0.87
SLC28A1O00337 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC28A1O00337 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC28A1O00337 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.5■□□□□ 0.87
SLC28A1O00337 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SLC28A1O00337 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.5■□□□□ 0.87
SLC28A1O00337 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.49■□□□□ 0.87
SLC28A1O00337 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.49■□□□□ 0.87
SLC28A1O00337 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.49■□□□□ 0.87
SLC28A1O00337 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SLC28A1O00337 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.49■□□□□ 0.87
SLC28A1O00337 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SLC28A1O00337 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC28A1O00337 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC28A1O00337 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.48■□□□□ 0.87
SLC28A1O00337 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC28A1O00337 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.48■□□□□ 0.87
SLC28A1O00337 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC28A1O00337 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.48■□□□□ 0.87
SLC28A1O00337 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.48■□□□□ 0.87
SLC28A1O00337 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SLC28A1O00337 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.48■□□□□ 0.87
SLC28A1O00337 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.48■□□□□ 0.87
SLC28A1O00337 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
SLC28A1O00337 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SLC28A1O00337 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 AC003102.1-202ENST00000563394 1796 ntBASIC20.47■□□□□ 0.87
SLC28A1O00337 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC28A1O00337 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC28A1O00337 AL136116.3-201ENST00000402907 1138 ntBASIC20.47■□□□□ 0.87
SLC28A1O00337 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.47■□□□□ 0.87
SLC28A1O00337 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.47■□□□□ 0.87
SLC28A1O00337 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.47■□□□□ 0.87
SLC28A1O00337 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.47■□□□□ 0.87
SLC28A1O00337 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC28A1O00337 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.47■□□□□ 0.87
SLC28A1O00337 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC28A1O00337 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 AF106564.1-201ENST00000607058 2553 ntBASIC20.47■□□□□ 0.87
SLC28A1O00337 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SLC28A1O00337 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SLC28A1O00337 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.47■□□□□ 0.87
SLC28A1O00337 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.46■□□□□ 0.87
SLC28A1O00337 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC28A1O00337 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC28A1O00337 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.46■□□□□ 0.87
SLC28A1O00337 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SLC28A1O00337 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.46■□□□□ 0.87
SLC28A1O00337 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SLC28A1O00337 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms