Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV3A0A0B4J244 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV3A0A0B4J244 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV3A0A0B4J244 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV3A0A0B4J244 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV3A0A0B4J244 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV3A0A0B4J244 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV3A0A0B4J244 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
TRAV3A0A0B4J244 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 SLC47A1P1-202ENST00000449666 945 ntBASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 AC131281.2-201ENST00000520478 145 ntBASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV3A0A0B4J244 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 AL138724.1-201ENST00000606771 1088 ntBASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 AC136469.2-201ENST00000623944 1028 ntBASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV3A0A0B4J244 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.34
TRAV3A0A0B4J244 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
TRAV3A0A0B4J244 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TRAV3A0A0B4J244 AP004607.7-201ENST00000527152 1677 ntBASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 DUX4L19-201ENST00000557448 1267 ntBASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRAV3A0A0B4J244 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 AC011298.3-201ENST00000615796 283 ntBASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 AC003102.1-202ENST00000563394 1796 ntBASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV3A0A0B4J244 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms