Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 AC093827.2-201ENST00000512654 315 ntBASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC28.71■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC28.7■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
SENP3-EIF4A1A0A087X0R7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 AC126544.1-201ENST00000580842 1059 ntBASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC28.68■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC28.68■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC28.68■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 AC079089.2-201ENST00000531211 1277 ntBASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 GXYLT1P5-201ENST00000614548 1189 ntBASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 PXK-203ENST00000383715 1756 ntTSL 5 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 AC233992.3-201ENST00000607491 485 ntBASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 BX842568.3-201ENST00000418104 571 ntBASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms