Protein–RNA interactions for Protein: Q9UFN0

NIPSNAP3A, Protein NipSnap homolog 3A, humanhuman

Predicted RBP Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPSNAP3AQ9UFN0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.38■□□□□ 0.85
NIPSNAP3AQ9UFN0 AC133637.1-201ENST00000624115 1537 ntBASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 FEM1AP4-201ENST00000443167 1987 ntBASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 OR7E47P-201ENST00000546390 1422 ntBASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 AL451085.2-201ENST00000605085 799 ntBASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 AL031602.1-201ENST00000633169 911 ntBASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
NIPSNAP3AQ9UFN0 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 MIR6724-1-201ENST00000616420 92 ntBASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 MIR6724-2-201ENST00000616483 92 ntBASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 MIR6724-4-201ENST00000617390 92 ntBASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 MIR6724-3-201ENST00000622482 92 ntBASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.36■□□□□ 0.85
NIPSNAP3AQ9UFN0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 RARRES2P1-201ENST00000474487 481 ntBASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 AC009299.2-201ENST00000482477 511 ntBASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 AC104564.3-201ENST00000582367 638 ntBASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 pRNA.6-201ENST00000610482 90 ntBASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 pRNA.5-201ENST00000612139 90 ntBASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 pRNA.11-201ENST00000618423 90 ntBASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 pRNA.13-201ENST00000619112 90 ntBASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 AC026471.6-201ENST00000622954 1905 ntBASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NIPSNAP3AQ9UFN0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
NIPSNAP3AQ9UFN0 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 AC006455.2-201ENST00000429931 906 ntBASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
NIPSNAP3AQ9UFN0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.33■□□□□ 0.84
NIPSNAP3AQ9UFN0 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NIPSNAP3AQ9UFN0 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms