Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 FAM99A-202ENST00000538190 1989 ntBASIC19.83■□□□□ 0.77
C9orf40Q8IXQ3 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
C9orf40Q8IXQ3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.83■□□□□ 0.77
C9orf40Q8IXQ3 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
C9orf40Q8IXQ3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.83■□□□□ 0.77
C9orf40Q8IXQ3 AC079140.4-201ENST00000507448 529 ntBASIC19.83■□□□□ 0.77
C9orf40Q8IXQ3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.83■□□□□ 0.77
C9orf40Q8IXQ3 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.76
C9orf40Q8IXQ3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
C9orf40Q8IXQ3 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.83■□□□□ 0.76
C9orf40Q8IXQ3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 AC026471.6-201ENST00000622954 1905 ntBASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
C9orf40Q8IXQ3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
C9orf40Q8IXQ3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 EP400NL-214ENST00000641289 2402 ntBASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 KRT18P5-201ENST00000436075 1291 ntBASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 KRT18P61-201ENST00000585825 1298 ntBASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
C9orf40Q8IXQ3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
C9orf40Q8IXQ3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 NTF6G-201ENST00000591094 616 ntBASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
C9orf40Q8IXQ3 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
C9orf40Q8IXQ3 AC004854.2-201ENST00000608450 1441 ntBASIC19.77■□□□□ 0.76
C9orf40Q8IXQ3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
C9orf40Q8IXQ3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
C9orf40Q8IXQ3 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
C9orf40Q8IXQ3 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.77■□□□□ 0.76
C9orf40Q8IXQ3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.77■□□□□ 0.76
C9orf40Q8IXQ3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms