Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.37■□□□□ 0.69
USP43Q70EL4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
USP43Q70EL4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 UNC93B8-201ENST00000511903 705 ntBASIC19.37■□□□□ 0.69
USP43Q70EL4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.37■□□□□ 0.69
USP43Q70EL4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 LINC01006-201ENST00000333319 2292 ntBASIC19.37■□□□□ 0.69
USP43Q70EL4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
USP43Q70EL4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP43Q70EL4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.36■□□□□ 0.69
USP43Q70EL4 AC144652.1-201ENST00000609974 1624 ntBASIC19.36■□□□□ 0.69
USP43Q70EL4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP43Q70EL4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP43Q70EL4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
USP43Q70EL4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
USP43Q70EL4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.36■□□□□ 0.69
USP43Q70EL4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP43Q70EL4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.36■□□□□ 0.69
USP43Q70EL4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.36■□□□□ 0.69
USP43Q70EL4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.36■□□□□ 0.69
USP43Q70EL4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
USP43Q70EL4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP43Q70EL4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
USP43Q70EL4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
USP43Q70EL4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
USP43Q70EL4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP43Q70EL4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.36■□□□□ 0.69
USP43Q70EL4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.35■□□□□ 0.69
USP43Q70EL4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.35■□□□□ 0.69
USP43Q70EL4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.35■□□□□ 0.69
USP43Q70EL4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.35■□□□□ 0.69
USP43Q70EL4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.35■□□□□ 0.69
USP43Q70EL4 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
USP43Q70EL4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP43Q70EL4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
USP43Q70EL4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP43Q70EL4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.34■□□□□ 0.69
USP43Q70EL4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP43Q70EL4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP43Q70EL4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP43Q70EL4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USP43Q70EL4 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.34■□□□□ 0.69
USP43Q70EL4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
USP43Q70EL4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.34■□□□□ 0.69
USP43Q70EL4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP43Q70EL4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP43Q70EL4 AC021242.3-201ENST00000607598 1377 ntBASIC19.33■□□□□ 0.69
USP43Q70EL4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP43Q70EL4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.33■□□□□ 0.69
USP43Q70EL4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.33■□□□□ 0.69
USP43Q70EL4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.33■□□□□ 0.69
USP43Q70EL4 MIR935-201ENST00000401179 91 ntBASIC19.33■□□□□ 0.68
USP43Q70EL4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.33■□□□□ 0.68
USP43Q70EL4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.33■□□□□ 0.68
USP43Q70EL4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.33■□□□□ 0.68
USP43Q70EL4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.33■□□□□ 0.68
USP43Q70EL4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
USP43Q70EL4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP43Q70EL4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
USP43Q70EL4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP43Q70EL4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP43Q70EL4 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
USP43Q70EL4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
USP43Q70EL4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP43Q70EL4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.32■□□□□ 0.68
USP43Q70EL4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
USP43Q70EL4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP43Q70EL4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
USP43Q70EL4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
USP43Q70EL4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
USP43Q70EL4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.32■□□□□ 0.68
USP43Q70EL4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP43Q70EL4 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP43Q70EL4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.31■□□□□ 0.68
USP43Q70EL4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USP43Q70EL4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.31■□□□□ 0.68
USP43Q70EL4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP43Q70EL4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.31■□□□□ 0.68
USP43Q70EL4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms