Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
RUNDC3AQ59EK9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.21■□□□□ 0.83
RUNDC3AQ59EK9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RUNDC3AQ59EK9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.21■□□□□ 0.83
RUNDC3AQ59EK9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.21■□□□□ 0.83
RUNDC3AQ59EK9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RUNDC3AQ59EK9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RUNDC3AQ59EK9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 AC073130.3-201ENST00000624389 2278 ntBASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 OR2I1P-207ENST00000453522 948 ntBASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 MIR3181-201ENST00000578512 73 ntBASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RUNDC3AQ59EK9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.17■□□□□ 0.82
RUNDC3AQ59EK9 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 AC010141.3-201ENST00000456659 717 ntBASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RUNDC3AQ59EK9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 KRT16P3-201ENST00000439127 1283 ntBASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 AC087239.1-201ENST00000622671 572 ntBASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RUNDC3AQ59EK9 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
RUNDC3AQ59EK9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.14■□□□□ 0.82
RUNDC3AQ59EK9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
RUNDC3AQ59EK9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RUNDC3AQ59EK9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RUNDC3AQ59EK9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.14■□□□□ 0.81
RUNDC3AQ59EK9 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
RUNDC3AQ59EK9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RUNDC3AQ59EK9 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.14■□□□□ 0.81
RUNDC3AQ59EK9 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RUNDC3AQ59EK9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms