Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX4Q33E94 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX4Q33E94 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFX4Q33E94 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
RFX4Q33E94 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
RFX4Q33E94 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 AC104564.3-201ENST00000582367 638 ntBASIC19.84■□□□□ 0.77
RFX4Q33E94 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.84■□□□□ 0.77
RFX4Q33E94 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
RFX4Q33E94 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
RFX4Q33E94 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.84■□□□□ 0.77
RFX4Q33E94 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
RFX4Q33E94 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFX4Q33E94 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
RFX4Q33E94 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.83■□□□□ 0.77
RFX4Q33E94 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
RFX4Q33E94 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
RFX4Q33E94 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RFX4Q33E94 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RFX4Q33E94 MTDHP2-201ENST00000601468 714 ntBASIC19.83■□□□□ 0.77
RFX4Q33E94 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
RFX4Q33E94 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
RFX4Q33E94 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
RFX4Q33E94 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.83■□□□□ 0.76
RFX4Q33E94 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.83■□□□□ 0.76
RFX4Q33E94 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
RFX4Q33E94 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.83■□□□□ 0.76
RFX4Q33E94 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX4Q33E94 OXCT2P1-201ENST00000447263 1535 ntBASIC19.82■□□□□ 0.76
RFX4Q33E94 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.82■□□□□ 0.76
RFX4Q33E94 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
RFX4Q33E94 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX4Q33E94 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.82■□□□□ 0.76
RFX4Q33E94 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RFX4Q33E94 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RFX4Q33E94 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.82■□□□□ 0.76
RFX4Q33E94 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RFX4Q33E94 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RFX4Q33E94 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.82■□□□□ 0.76
RFX4Q33E94 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RFX4Q33E94 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.82■□□□□ 0.76
RFX4Q33E94 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
RFX4Q33E94 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
RFX4Q33E94 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.81■□□□□ 0.76
RFX4Q33E94 AC004687.1-201ENST00000579003 1625 ntBASIC19.81■□□□□ 0.76
RFX4Q33E94 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.81■□□□□ 0.76
RFX4Q33E94 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.81■□□□□ 0.76
RFX4Q33E94 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
RFX4Q33E94 MIR4787-201ENST00000607364 84 ntBASIC19.81■□□□□ 0.76
RFX4Q33E94 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
RFX4Q33E94 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.81■□□□□ 0.76
RFX4Q33E94 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.81■□□□□ 0.76
RFX4Q33E94 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX4Q33E94 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX4Q33E94 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
RFX4Q33E94 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX4Q33E94 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX4Q33E94 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.8■□□□□ 0.76
RFX4Q33E94 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.8■□□□□ 0.76
RFX4Q33E94 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX4Q33E94 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.8■□□□□ 0.76
RFX4Q33E94 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.8■□□□□ 0.76
RFX4Q33E94 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX4Q33E94 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX4Q33E94 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX4Q33E94 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX4Q33E94 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX4Q33E94 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX4Q33E94 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX4Q33E94 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX4Q33E94 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
RFX4Q33E94 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
RFX4Q33E94 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX4Q33E94 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX4Q33E94 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.79■□□□□ 0.76
RFX4Q33E94 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms