Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC005181.1-201ENST00000604782 1256 ntBASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SHROOM1Q2M3G4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 AC083906.2-201ENST00000511578 360 ntBASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 SLC7A5P2-201ENST00000553010 536 ntBASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC25.14■■□□□ 1.62
SHROOM1Q2M3G4 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
SHROOM1Q2M3G4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC25.14■■□□□ 1.61
SHROOM1Q2M3G4 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
SHROOM1Q2M3G4 AC139530.1-201ENST00000575312 1977 ntBASIC25.14■■□□□ 1.61
SHROOM1Q2M3G4 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC25.14■■□□□ 1.61
SHROOM1Q2M3G4 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC25.14■■□□□ 1.61
SHROOM1Q2M3G4 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 AL138781.1-201ENST00000566567 1274 ntBASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
SHROOM1Q2M3G4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 AC007322.1-201ENST00000426983 750 ntBASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 TSPY6P-201ENST00000448518 926 ntBASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 EEF1DP3-203ENST00000566025 782 ntBASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHROOM1Q2M3G4 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHROOM1Q2M3G4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 APTR-205ENST00000447009 902 ntTSL 2 BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 AC098934.4-201ENST00000564127 592 ntBASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 AL121832.2-201ENST00000610979 668 ntBASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 AC010536.3-201ENST00000620306 533 ntBASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 AC231657.2-201ENST00000624556 255 ntBASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.1■■□□□ 1.61
SHROOM1Q2M3G4 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 AC142086.2-201ENST00000569753 217 ntBASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHROOM1Q2M3G4 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.08■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms