Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HSPG2P98160 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HSPG2P98160 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC13.5□□□□□ -0.25
HSPG2P98160 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HSPG2P98160 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HSPG2P98160 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HSPG2P98160 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HSPG2P98160 AC079630.1-202ENST00000618127 1840 ntBASIC13.5□□□□□ -0.25
HSPG2P98160 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HSPG2P98160 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC13.5□□□□□ -0.25
HSPG2P98160 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC13.5□□□□□ -0.25
HSPG2P98160 EEF1DP3-203ENST00000566025 782 ntBASIC13.5□□□□□ -0.25
HSPG2P98160 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC13.49□□□□□ -0.25
HSPG2P98160 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 DUSP8P4-201ENST00000399538 1761 ntBASIC13.49□□□□□ -0.25
HSPG2P98160 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC13.49□□□□□ -0.25
HSPG2P98160 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC13.49□□□□□ -0.25
HSPG2P98160 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC13.49□□□□□ -0.25
HSPG2P98160 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 RNF146-206ENST00000480444 843 ntTSL 2 BASIC13.49□□□□□ -0.25
HSPG2P98160 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC13.49□□□□□ -0.25
HSPG2P98160 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC13.49□□□□□ -0.25
HSPG2P98160 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC13.49□□□□□ -0.25
HSPG2P98160 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HSPG2P98160 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC13.48□□□□□ -0.25
HSPG2P98160 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC13.48□□□□□ -0.25
HSPG2P98160 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC13.48□□□□□ -0.25
HSPG2P98160 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC13.48□□□□□ -0.25
HSPG2P98160 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC13.48□□□□□ -0.25
HSPG2P98160 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC13.48□□□□□ -0.25
HSPG2P98160 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC13.48□□□□□ -0.25
HSPG2P98160 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC13.48□□□□□ -0.25
HSPG2P98160 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC13.48□□□□□ -0.25
HSPG2P98160 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC13.48□□□□□ -0.25
HSPG2P98160 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC13.48□□□□□ -0.25
HSPG2P98160 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HSPG2P98160 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HSPG2P98160 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC13.48□□□□□ -0.25
HSPG2P98160 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
HSPG2P98160 AC069236.1-201ENST00000604339 616 ntBASIC13.48□□□□□ -0.25
HSPG2P98160 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HSPG2P98160 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
HSPG2P98160 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC13.47□□□□□ -0.25
HSPG2P98160 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC13.47□□□□□ -0.25
HSPG2P98160 AC133561.5-201ENST00000635547 218 ntBASIC13.47□□□□□ -0.25
HSPG2P98160 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HSPG2P98160 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HSPG2P98160 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC13.47□□□□□ -0.25
HSPG2P98160 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC13.47□□□□□ -0.25
HSPG2P98160 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC13.47□□□□□ -0.25
HSPG2P98160 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HSPG2P98160 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HSPG2P98160 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HSPG2P98160 ARMC10P1-201ENST00000313754 855 ntBASIC13.47□□□□□ -0.25
HSPG2P98160 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HSPG2P98160 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HSPG2P98160 DUSP8P3-201ENST00000399571 1760 ntBASIC13.47□□□□□ -0.25
HSPG2P98160 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC13.47□□□□□ -0.25
HSPG2P98160 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC13.47□□□□□ -0.25
HSPG2P98160 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HSPG2P98160 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC13.46□□□□□ -0.25
HSPG2P98160 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HSPG2P98160 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HSPG2P98160 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HSPG2P98160 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC13.46□□□□□ -0.25
HSPG2P98160 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC13.46□□□□□ -0.25
HSPG2P98160 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HSPG2P98160 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HSPG2P98160 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
HSPG2P98160 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HSPG2P98160 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HSPG2P98160 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
HSPG2P98160 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HSPG2P98160 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC13.46□□□□□ -0.26
HSPG2P98160 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC13.45□□□□□ -0.26
HSPG2P98160 USP45-205ENST00000472914 1617 ntTSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms