Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VSX2P58304 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VSX2P58304 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.48■□□□□ 0.87
VSX2P58304 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
VSX2P58304 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
VSX2P58304 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.47■□□□□ 0.87
VSX2P58304 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.47■□□□□ 0.87
VSX2P58304 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.47■□□□□ 0.87
VSX2P58304 AC104564.3-201ENST00000582367 638 ntBASIC20.47■□□□□ 0.87
VSX2P58304 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
VSX2P58304 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VSX2P58304 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.47■□□□□ 0.87
VSX2P58304 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.47■□□□□ 0.87
VSX2P58304 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
VSX2P58304 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
VSX2P58304 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.46■□□□□ 0.87
VSX2P58304 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
VSX2P58304 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
VSX2P58304 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.46■□□□□ 0.87
VSX2P58304 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.46■□□□□ 0.87
VSX2P58304 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.46■□□□□ 0.87
VSX2P58304 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.46■□□□□ 0.87
VSX2P58304 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.46■□□□□ 0.87
VSX2P58304 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
VSX2P58304 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.46■□□□□ 0.87
VSX2P58304 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
VSX2P58304 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VSX2P58304 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.46■□□□□ 0.87
VSX2P58304 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
VSX2P58304 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VSX2P58304 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VSX2P58304 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.45■□□□□ 0.86
VSX2P58304 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VSX2P58304 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.45■□□□□ 0.86
VSX2P58304 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.45■□□□□ 0.86
VSX2P58304 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VSX2P58304 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
VSX2P58304 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VSX2P58304 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VSX2P58304 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.45■□□□□ 0.86
VSX2P58304 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
VSX2P58304 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VSX2P58304 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VSX2P58304 AC055733.4-201ENST00000638462 1354 ntBASIC20.45■□□□□ 0.86
VSX2P58304 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.45■□□□□ 0.86
VSX2P58304 GUSBP5-202ENST00000510805 1989 ntBASIC20.45■□□□□ 0.86
VSX2P58304 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VSX2P58304 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VSX2P58304 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VSX2P58304 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VSX2P58304 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.44■□□□□ 0.86
VSX2P58304 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.44■□□□□ 0.86
VSX2P58304 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.44■□□□□ 0.86
VSX2P58304 AC092666.2-201ENST00000613287 246 ntBASIC20.44■□□□□ 0.86
VSX2P58304 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.44■□□□□ 0.86
VSX2P58304 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VSX2P58304 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.44■□□□□ 0.86
VSX2P58304 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.44■□□□□ 0.86
VSX2P58304 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VSX2P58304 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VSX2P58304 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VSX2P58304 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VSX2P58304 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VSX2P58304 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.43■□□□□ 0.86
VSX2P58304 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.43■□□□□ 0.86
VSX2P58304 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.43■□□□□ 0.86
VSX2P58304 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VSX2P58304 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VSX2P58304 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VSX2P58304 AP006587.3-201ENST00000525742 1516 ntBASIC20.43■□□□□ 0.86
VSX2P58304 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VSX2P58304 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VSX2P58304 AC092053.2-201ENST00000640557 1818 ntBASIC20.42■□□□□ 0.86
VSX2P58304 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VSX2P58304 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VSX2P58304 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.42■□□□□ 0.86
VSX2P58304 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms