Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.61■□□□□ 0.89
CLDN6P56747 MKRN4P-201ENST00000444706 1521 ntBASIC20.61■□□□□ 0.89
CLDN6P56747 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.61■□□□□ 0.89
CLDN6P56747 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.61■□□□□ 0.89
CLDN6P56747 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLDN6P56747 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN6P56747 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
CLDN6P56747 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN6P56747 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN6P56747 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN6P56747 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN6P56747 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.6■□□□□ 0.89
CLDN6P56747 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.6■□□□□ 0.89
CLDN6P56747 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN6P56747 AC098590.1-201ENST00000468126 897 ntBASIC20.6■□□□□ 0.89
CLDN6P56747 AC138907.5-202ENST00000569484 235 ntBASIC20.6■□□□□ 0.89
CLDN6P56747 AC016405.3-201ENST00000607710 860 ntBASIC20.6■□□□□ 0.89
CLDN6P56747 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.6■□□□□ 0.89
CLDN6P56747 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.6■□□□□ 0.89
CLDN6P56747 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN6P56747 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLDN6P56747 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.59■□□□□ 0.89
CLDN6P56747 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 RARRES2P4-201ENST00000514074 484 ntBASIC20.59■□□□□ 0.89
CLDN6P56747 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CLDN6P56747 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.59■□□□□ 0.89
CLDN6P56747 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.59■□□□□ 0.89
CLDN6P56747 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLDN6P56747 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
CLDN6P56747 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CLDN6P56747 AP004607.7-201ENST00000527152 1677 ntBASIC20.58■□□□□ 0.89
CLDN6P56747 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLDN6P56747 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLDN6P56747 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.58■□□□□ 0.89
CLDN6P56747 TERF1P5-201ENST00000477545 1207 ntBASIC20.58■□□□□ 0.89
CLDN6P56747 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.58■□□□□ 0.89
CLDN6P56747 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.58■□□□□ 0.89
CLDN6P56747 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.58■□□□□ 0.89
CLDN6P56747 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CLDN6P56747 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.58■□□□□ 0.88
CLDN6P56747 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLDN6P56747 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN6P56747 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.57■□□□□ 0.88
CLDN6P56747 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CLDN6P56747 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN6P56747 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.57■□□□□ 0.88
CLDN6P56747 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CLDN6P56747 AC013268.1-206ENST00000638368 961 ntBASIC20.57■□□□□ 0.88
CLDN6P56747 AC112229.1-201ENST00000639295 961 ntBASIC20.57■□□□□ 0.88
CLDN6P56747 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CLDN6P56747 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.56■□□□□ 0.88
CLDN6P56747 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.56■□□□□ 0.88
CLDN6P56747 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN6P56747 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN6P56747 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CLDN6P56747 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.56■□□□□ 0.88
CLDN6P56747 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN6P56747 DUSP5P2-201ENST00000426873 1033 ntBASIC20.56■□□□□ 0.88
CLDN6P56747 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CLDN6P56747 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CLDN6P56747 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN6P56747 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CLDN6P56747 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN6P56747 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN6P56747 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN6P56747 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.55■□□□□ 0.88
CLDN6P56747 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN6P56747 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CLDN6P56747 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN6P56747 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN6P56747 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.55■□□□□ 0.88
CLDN6P56747 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN6P56747 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN6P56747 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.55■□□□□ 0.88
CLDN6P56747 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN6P56747 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN6P56747 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN6P56747 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CLDN6P56747 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms