Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIM2P55344 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.34■□□□□ 0.85
LIM2P55344 AL034346.1-201ENST00000568244 1277 ntBASIC20.34■□□□□ 0.85
LIM2P55344 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIM2P55344 MIR6084-201ENST00000622012 110 ntBASIC20.34■□□□□ 0.85
LIM2P55344 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.34■□□□□ 0.85
LIM2P55344 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIM2P55344 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIM2P55344 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.34■□□□□ 0.85
LIM2P55344 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LIM2P55344 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIM2P55344 BX005040.4-201ENST00000637145 1518 ntBASIC20.33■□□□□ 0.85
LIM2P55344 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.33■□□□□ 0.85
LIM2P55344 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.33■□□□□ 0.85
LIM2P55344 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.33■□□□□ 0.85
LIM2P55344 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.33■□□□□ 0.85
LIM2P55344 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
LIM2P55344 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIM2P55344 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIM2P55344 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIM2P55344 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIM2P55344 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIM2P55344 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIM2P55344 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIM2P55344 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIM2P55344 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIM2P55344 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LIM2P55344 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIM2P55344 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIM2P55344 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIM2P55344 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.32■□□□□ 0.84
LIM2P55344 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIM2P55344 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.32■□□□□ 0.84
LIM2P55344 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.32■□□□□ 0.84
LIM2P55344 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIM2P55344 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.32■□□□□ 0.84
LIM2P55344 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIM2P55344 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.32■□□□□ 0.84
LIM2P55344 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIM2P55344 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LIM2P55344 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIM2P55344 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.32■□□□□ 0.84
LIM2P55344 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
LIM2P55344 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.31■□□□□ 0.84
LIM2P55344 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.31■□□□□ 0.84
LIM2P55344 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.31■□□□□ 0.84
LIM2P55344 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIM2P55344 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.3■□□□□ 0.84
LIM2P55344 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.3■□□□□ 0.84
LIM2P55344 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LIM2P55344 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.3■□□□□ 0.84
LIM2P55344 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.3■□□□□ 0.84
LIM2P55344 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.3■□□□□ 0.84
LIM2P55344 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIM2P55344 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LIM2P55344 FBXW4P1-201ENST00000426721 2239 ntBASIC20.29■□□□□ 0.84
LIM2P55344 FAM99A-202ENST00000538190 1989 ntBASIC20.29■□□□□ 0.84
LIM2P55344 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.29■□□□□ 0.84
LIM2P55344 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
LIM2P55344 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LIM2P55344 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.29■□□□□ 0.84
LIM2P55344 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.29■□□□□ 0.84
LIM2P55344 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIM2P55344 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIM2P55344 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.28■□□□□ 0.84
LIM2P55344 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIM2P55344 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIM2P55344 AC027612.3-201ENST00000413684 1047 ntBASIC20.28■□□□□ 0.84
LIM2P55344 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.28■□□□□ 0.84
LIM2P55344 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIM2P55344 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.28■□□□□ 0.84
LIM2P55344 AC009237.3-201ENST00000393279 1427 ntBASIC20.27■□□□□ 0.84
LIM2P55344 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms