Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXA1P49639 FBXW4P1-201ENST00000426721 2239 ntBASIC17.64■□□□□ 0.41
HOXA1P49639 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXA1P49639 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HOXA1P49639 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
HOXA1P49639 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC17.63■□□□□ 0.41
HOXA1P49639 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXA1P49639 AC103724.3-201ENST00000564481 992 ntBASIC17.63■□□□□ 0.41
HOXA1P49639 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC17.63■□□□□ 0.41
HOXA1P49639 AL033527.3-201ENST00000566366 1196 ntBASIC17.63■□□□□ 0.41
HOXA1P49639 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC17.63■□□□□ 0.41
HOXA1P49639 AL031848.2-201ENST00000607670 837 ntBASIC17.63■□□□□ 0.41
HOXA1P49639 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC17.63■□□□□ 0.41
HOXA1P49639 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
HOXA1P49639 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
HOXA1P49639 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXA1P49639 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXA1P49639 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXA1P49639 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXA1P49639 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXA1P49639 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXA1P49639 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXA1P49639 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXA1P49639 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
HOXA1P49639 SENP5-202ENST00000419026 973 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXA1P49639 AC103834.1-201ENST00000520383 144 ntBASIC17.62■□□□□ 0.41
HOXA1P49639 AC137630.3-201ENST00000607245 391 ntBASIC17.62■□□□□ 0.41
HOXA1P49639 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXA1P49639 AC009086.3-201ENST00000623486 1008 ntBASIC17.62■□□□□ 0.41
HOXA1P49639 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HOXA1P49639 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXA1P49639 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
HOXA1P49639 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXA1P49639 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXA1P49639 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXA1P49639 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HOXA1P49639 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXA1P49639 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXA1P49639 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXA1P49639 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HOXA1P49639 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXA1P49639 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXA1P49639 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXA1P49639 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HOXA1P49639 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXA1P49639 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXA1P49639 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXA1P49639 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
HOXA1P49639 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HOXA1P49639 LINC01960-201ENST00000563759 1884 ntBASIC17.61■□□□□ 0.41
HOXA1P49639 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXA1P49639 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXA1P49639 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXA1P49639 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXA1P49639 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXA1P49639 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXA1P49639 CLTA-210ENST00000540080 989 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXA1P49639 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC17.6■□□□□ 0.41
HOXA1P49639 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.6■□□□□ 0.41
HOXA1P49639 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC17.6■□□□□ 0.41
HOXA1P49639 FP325331.1-202ENST00000623531 1380 ntBASIC17.6■□□□□ 0.41
HOXA1P49639 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HOXA1P49639 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXA1P49639 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXA1P49639 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HOXA1P49639 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXA1P49639 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
HOXA1P49639 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXA1P49639 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
HOXA1P49639 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXA1P49639 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXA1P49639 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXA1P49639 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HOXA1P49639 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXA1P49639 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
HOXA1P49639 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXA1P49639 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXA1P49639 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXA1P49639 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXA1P49639 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXA1P49639 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXA1P49639 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXA1P49639 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
HOXA1P49639 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HOXA1P49639 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HOXA1P49639 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXA1P49639 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXA1P49639 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXA1P49639 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
HOXA1P49639 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms