Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
MSX2P35548 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.38■□□□□ 0.85
MSX2P35548 AL391422.3-201ENST00000603791 2761 ntBASIC20.38■□□□□ 0.85
MSX2P35548 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.38■□□□□ 0.85
MSX2P35548 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.38■□□□□ 0.85
MSX2P35548 AC074183.2-201ENST00000623112 922 ntBASIC20.38■□□□□ 0.85
MSX2P35548 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
MSX2P35548 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
MSX2P35548 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSX2P35548 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.37■□□□□ 0.85
MSX2P35548 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
MSX2P35548 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
MSX2P35548 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
MSX2P35548 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 ATP5G2P3-201ENST00000429083 425 ntBASIC20.37■□□□□ 0.85
MSX2P35548 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.37■□□□□ 0.85
MSX2P35548 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.37■□□□□ 0.85
MSX2P35548 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.37■□□□□ 0.85
MSX2P35548 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.37■□□□□ 0.85
MSX2P35548 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX2P35548 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.37■□□□□ 0.85
MSX2P35548 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX2P35548 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX2P35548 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
MSX2P35548 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX2P35548 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.36■□□□□ 0.85
MSX2P35548 HSD17B1P1-201ENST00000590052 955 ntBASIC20.36■□□□□ 0.85
MSX2P35548 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX2P35548 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX2P35548 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX2P35548 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX2P35548 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.36■□□□□ 0.85
MSX2P35548 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX2P35548 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.36■□□□□ 0.85
MSX2P35548 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.36■□□□□ 0.85
MSX2P35548 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.35■□□□□ 0.85
MSX2P35548 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX2P35548 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX2P35548 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX2P35548 NTF6A-201ENST00000591175 560 ntBASIC20.35■□□□□ 0.85
MSX2P35548 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
MSX2P35548 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.35■□□□□ 0.85
MSX2P35548 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX2P35548 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSX2P35548 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX2P35548 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX2P35548 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.35■□□□□ 0.85
MSX2P35548 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.35■□□□□ 0.85
MSX2P35548 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX2P35548 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.35■□□□□ 0.85
MSX2P35548 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.34■□□□□ 0.85
MSX2P35548 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.34■□□□□ 0.85
MSX2P35548 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
MSX2P35548 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX2P35548 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.34■□□□□ 0.85
MSX2P35548 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSX2P35548 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSX2P35548 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSX2P35548 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
MSX2P35548 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
MSX2P35548 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSX2P35548 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
MSX2P35548 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.33■□□□□ 0.85
MSX2P35548 AC009102.2-201ENST00000606772 1639 ntBASIC20.33■□□□□ 0.84
MSX2P35548 AC007952.6-201ENST00000573168 2673 ntBASIC20.33■□□□□ 0.84
MSX2P35548 AC003957.1-201ENST00000625108 2673 ntBASIC20.33■□□□□ 0.84
MSX2P35548 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSX2P35548 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSX2P35548 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSX2P35548 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSX2P35548 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSX2P35548 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
MSX2P35548 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.32■□□□□ 0.84
MSX2P35548 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms