Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 AC091874.3-201ENST00000512672 1195 ntBASIC18.76■□□□□ 0.59
COL8A1P27658 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.76■□□□□ 0.59
COL8A1P27658 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.76■□□□□ 0.59
COL8A1P27658 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.76■□□□□ 0.59
COL8A1P27658 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
COL8A1P27658 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.76■□□□□ 0.59
COL8A1P27658 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL8A1P27658 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 AC010141.2-201ENST00000452426 721 ntBASIC18.75■□□□□ 0.59
COL8A1P27658 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL8A1P27658 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.75■□□□□ 0.59
COL8A1P27658 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.75■□□□□ 0.59
COL8A1P27658 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL8A1P27658 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL8A1P27658 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.74■□□□□ 0.59
COL8A1P27658 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL8A1P27658 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL8A1P27658 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL8A1P27658 AL512625.2-201ENST00000417533 625 ntBASIC18.74■□□□□ 0.59
COL8A1P27658 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.74■□□□□ 0.59
COL8A1P27658 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.74■□□□□ 0.59
COL8A1P27658 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.74■□□□□ 0.59
COL8A1P27658 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.74■□□□□ 0.59
COL8A1P27658 AC069236.1-201ENST00000604339 616 ntBASIC18.74■□□□□ 0.59
COL8A1P27658 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.74■□□□□ 0.59
COL8A1P27658 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL8A1P27658 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL8A1P27658 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL8A1P27658 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL8A1P27658 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL8A1P27658 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL8A1P27658 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.73■□□□□ 0.59
COL8A1P27658 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL8A1P27658 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.73■□□□□ 0.59
COL8A1P27658 UNC93B5-201ENST00000530315 699 ntBASIC18.73■□□□□ 0.59
COL8A1P27658 KRT18P20-201ENST00000548986 1279 ntBASIC18.73■□□□□ 0.59
COL8A1P27658 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL8A1P27658 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.73■□□□□ 0.59
COL8A1P27658 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL8A1P27658 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL8A1P27658 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
COL8A1P27658 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
COL8A1P27658 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
COL8A1P27658 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.72■□□□□ 0.59
COL8A1P27658 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
COL8A1P27658 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.72■□□□□ 0.59
COL8A1P27658 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.72■□□□□ 0.59
COL8A1P27658 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.72■□□□□ 0.59
COL8A1P27658 AP003097.1-201ENST00000530657 1135 ntBASIC18.72■□□□□ 0.59
COL8A1P27658 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.72■□□□□ 0.59
COL8A1P27658 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.72■□□□□ 0.59
COL8A1P27658 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC18.72■□□□□ 0.59
COL8A1P27658 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.72■□□□□ 0.59
COL8A1P27658 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL8A1P27658 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.71■□□□□ 0.59
COL8A1P27658 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL8A1P27658 MIR718-201ENST00000390190 70 ntBASIC18.71■□□□□ 0.59
COL8A1P27658 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL8A1P27658 SNORA78-201ENST00000459373 127 ntBASIC18.71■□□□□ 0.59
COL8A1P27658 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.71■□□□□ 0.59
COL8A1P27658 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.71■□□□□ 0.59
COL8A1P27658 AC138907.5-202ENST00000569484 235 ntBASIC18.71■□□□□ 0.59
COL8A1P27658 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.71■□□□□ 0.59
COL8A1P27658 LINC01023-201ENST00000606054 436 ntBASIC18.71■□□□□ 0.59
COL8A1P27658 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL8A1P27658 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL8A1P27658 DUSP8P5-201ENST00000422884 1815 ntBASIC18.71■□□□□ 0.59
COL8A1P27658 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL8A1P27658 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL8A1P27658 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL8A1P27658 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.71■□□□□ 0.59
COL8A1P27658 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL8A1P27658 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.71■□□□□ 0.59
COL8A1P27658 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.71■□□□□ 0.59
COL8A1P27658 DUSP8P4-201ENST00000399538 1761 ntBASIC18.7■□□□□ 0.58
COL8A1P27658 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL8A1P27658 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms