Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
MMP3P08254 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
MMP3P08254 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
MMP3P08254 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
MMP3P08254 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.87■■□□□ 1.41
MMP3P08254 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MMP3P08254 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
MMP3P08254 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.86■■□□□ 1.41
MMP3P08254 SLC29A4P1-201ENST00000398760 971 ntBASIC23.86■■□□□ 1.41
MMP3P08254 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
MMP3P08254 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.86■■□□□ 1.41
MMP3P08254 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.86■■□□□ 1.41
MMP3P08254 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
MMP3P08254 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.86■■□□□ 1.41
MMP3P08254 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MMP3P08254 AC093323.1-202ENST00000635031 2045 ntBASIC23.86■■□□□ 1.41
MMP3P08254 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
MMP3P08254 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.85■■□□□ 1.41
MMP3P08254 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
MMP3P08254 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.85■■□□□ 1.41
MMP3P08254 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.85■■□□□ 1.41
MMP3P08254 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.85■■□□□ 1.41
MMP3P08254 AF201337.1-201ENST00000520239 748 ntBASIC23.85■■□□□ 1.41
MMP3P08254 CD99P1-205ENST00000527459 561 ntBASIC23.85■■□□□ 1.41
MMP3P08254 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.85■■□□□ 1.41
MMP3P08254 AC133552.2-202ENST00000575694 574 ntBASIC23.85■■□□□ 1.41
MMP3P08254 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.85■■□□□ 1.41
MMP3P08254 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MMP3P08254 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.85■■□□□ 1.41
MMP3P08254 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.85■■□□□ 1.41
MMP3P08254 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MMP3P08254 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC23.85■■□□□ 1.41
MMP3P08254 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC23.84■■□□□ 1.41
MMP3P08254 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.84■■□□□ 1.41
MMP3P08254 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
MMP3P08254 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MMP3P08254 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MMP3P08254 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MMP3P08254 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
MMP3P08254 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MMP3P08254 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.84■■□□□ 1.41
MMP3P08254 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC23.84■■□□□ 1.41
MMP3P08254 AC013268.1-206ENST00000638368 961 ntBASIC23.84■■□□□ 1.41
MMP3P08254 AC112229.1-201ENST00000639295 961 ntBASIC23.84■■□□□ 1.41
MMP3P08254 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
MMP3P08254 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.84■■□□□ 1.41
MMP3P08254 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MMP3P08254 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MMP3P08254 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MMP3P08254 TERF1P5-201ENST00000477545 1207 ntBASIC23.83■■□□□ 1.41
MMP3P08254 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.83■■□□□ 1.41
MMP3P08254 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC23.83■■□□□ 1.41
MMP3P08254 AC105036.2-201ENST00000569468 176 ntBASIC23.83■■□□□ 1.41
MMP3P08254 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.83■■□□□ 1.41
MMP3P08254 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MMP3P08254 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
MMP3P08254 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.82■■□□□ 1.4
MMP3P08254 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MMP3P08254 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
MMP3P08254 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.82■■□□□ 1.4
MMP3P08254 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.82■■□□□ 1.4
MMP3P08254 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MMP3P08254 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.82■■□□□ 1.4
MMP3P08254 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.82■■□□□ 1.4
MMP3P08254 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
MMP3P08254 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.82■■□□□ 1.4
MMP3P08254 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MMP3P08254 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
MMP3P08254 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MMP3P08254 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.82■■□□□ 1.4
MMP3P08254 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MMP3P08254 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.82■■□□□ 1.4
MMP3P08254 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MMP3P08254 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.81■■□□□ 1.4
MMP3P08254 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.81■■□□□ 1.4
MMP3P08254 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
MMP3P08254 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.81■■□□□ 1.4
MMP3P08254 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.81■■□□□ 1.4
MMP3P08254 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
MMP3P08254 KRT18P6-201ENST00000555540 1265 ntBASIC23.81■■□□□ 1.4
MMP3P08254 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.81■■□□□ 1.4
MMP3P08254 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
MMP3P08254 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
MMP3P08254 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MMP3P08254 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.81■■□□□ 1.4
MMP3P08254 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MMP3P08254 AC139530.1-201ENST00000575312 1977 ntBASIC23.8■■□□□ 1.4
MMP3P08254 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
MMP3P08254 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
MMP3P08254 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.8■■□□□ 1.4
MMP3P08254 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms