Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.3■□□□□ 0.68
RAF1P04049 AC004911.1-201ENST00000416316 871 ntBASIC19.3■□□□□ 0.68
RAF1P04049 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.3■□□□□ 0.68
RAF1P04049 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RAF1P04049 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RAF1P04049 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.3■□□□□ 0.68
RAF1P04049 pRNA.6-201ENST00000610482 90 ntBASIC19.3■□□□□ 0.68
RAF1P04049 pRNA.5-201ENST00000612139 90 ntBASIC19.3■□□□□ 0.68
RAF1P04049 pRNA.11-201ENST00000618423 90 ntBASIC19.3■□□□□ 0.68
RAF1P04049 pRNA.13-201ENST00000619112 90 ntBASIC19.3■□□□□ 0.68
RAF1P04049 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.3■□□□□ 0.68
RAF1P04049 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAF1P04049 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAF1P04049 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAF1P04049 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.3■□□□□ 0.68
RAF1P04049 AC073130.3-201ENST00000624389 2278 ntBASIC19.3■□□□□ 0.68
RAF1P04049 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RAF1P04049 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.29■□□□□ 0.68
RAF1P04049 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.29■□□□□ 0.68
RAF1P04049 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RAF1P04049 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
RAF1P04049 ID1-201ENST00000376105 1233 ntBASIC19.29■□□□□ 0.68
RAF1P04049 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.29■□□□□ 0.68
RAF1P04049 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.29■□□□□ 0.68
RAF1P04049 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
RAF1P04049 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.29■□□□□ 0.68
RAF1P04049 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.29■□□□□ 0.68
RAF1P04049 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RAF1P04049 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
RAF1P04049 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
RAF1P04049 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RAF1P04049 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.29■□□□□ 0.68
RAF1P04049 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.28■□□□□ 0.68
RAF1P04049 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.28■□□□□ 0.68
RAF1P04049 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RAF1P04049 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RAF1P04049 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAF1P04049 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.28■□□□□ 0.68
RAF1P04049 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
RAF1P04049 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.28■□□□□ 0.68
RAF1P04049 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RAF1P04049 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAF1P04049 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.28■□□□□ 0.68
RAF1P04049 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RAF1P04049 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RAF1P04049 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.27■□□□□ 0.68
RAF1P04049 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.27■□□□□ 0.68
RAF1P04049 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.27■□□□□ 0.68
RAF1P04049 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.27■□□□□ 0.68
RAF1P04049 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.27■□□□□ 0.68
RAF1P04049 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
RAF1P04049 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.27■□□□□ 0.68
RAF1P04049 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.27■□□□□ 0.68
RAF1P04049 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RAF1P04049 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RAF1P04049 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RAF1P04049 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.27■□□□□ 0.67
RAF1P04049 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
RAF1P04049 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
RAF1P04049 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RAF1P04049 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RAF1P04049 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RAF1P04049 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RAF1P04049 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RAF1P04049 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.26■□□□□ 0.67
RAF1P04049 AL354811.1-201ENST00000610286 706 ntBASIC19.26■□□□□ 0.67
RAF1P04049 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RAF1P04049 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RAF1P04049 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RAF1P04049 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
RAF1P04049 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RAF1P04049 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAF1P04049 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAF1P04049 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RAF1P04049 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.25■□□□□ 0.67
RAF1P04049 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RAF1P04049 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.25■□□□□ 0.67
RAF1P04049 IGHV3-19-201ENST00000521488 291 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms