Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLPTM1O96005 AL035685.1-201ENST00000636663 812 ntBASIC20.1■□□□□ 0.81
CLPTM1O96005 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.1■□□□□ 0.81
CLPTM1O96005 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CLPTM1O96005 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLPTM1O96005 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLPTM1O96005 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.1■□□□□ 0.81
CLPTM1O96005 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.1■□□□□ 0.81
CLPTM1O96005 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.1■□□□□ 0.81
CLPTM1O96005 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CLPTM1O96005 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLPTM1O96005 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CLPTM1O96005 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLPTM1O96005 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.09■□□□□ 0.81
CLPTM1O96005 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLPTM1O96005 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.09■□□□□ 0.81
CLPTM1O96005 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.09■□□□□ 0.81
CLPTM1O96005 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLPTM1O96005 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.09■□□□□ 0.81
CLPTM1O96005 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.09■□□□□ 0.81
CLPTM1O96005 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLPTM1O96005 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLPTM1O96005 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLPTM1O96005 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.08■□□□□ 0.81
CLPTM1O96005 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.08■□□□□ 0.81
CLPTM1O96005 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CLPTM1O96005 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CLPTM1O96005 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.08■□□□□ 0.81
CLPTM1O96005 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CLPTM1O96005 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLPTM1O96005 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLPTM1O96005 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CLPTM1O96005 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.08■□□□□ 0.81
CLPTM1O96005 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLPTM1O96005 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLPTM1O96005 FEM1AP1-201ENST00000431297 1995 ntBASIC20.08■□□□□ 0.8
CLPTM1O96005 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLPTM1O96005 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLPTM1O96005 AC090877.2-201ENST00000558441 1738 ntBASIC20.07■□□□□ 0.8
CLPTM1O96005 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLPTM1O96005 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.07■□□□□ 0.8
CLPTM1O96005 AL020996.1-203ENST00000536896 2307 ntBASIC20.07■□□□□ 0.8
CLPTM1O96005 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CLPTM1O96005 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLPTM1O96005 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.07■□□□□ 0.8
CLPTM1O96005 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.07■□□□□ 0.8
CLPTM1O96005 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CLPTM1O96005 AC011551.1-201ENST00000614101 683 ntBASIC20.07■□□□□ 0.8
CLPTM1O96005 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.07■□□□□ 0.8
CLPTM1O96005 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CLPTM1O96005 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLPTM1O96005 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.07■□□□□ 0.8
CLPTM1O96005 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLPTM1O96005 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLPTM1O96005 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.06■□□□□ 0.8
CLPTM1O96005 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLPTM1O96005 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.06■□□□□ 0.8
CLPTM1O96005 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLPTM1O96005 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLPTM1O96005 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.06■□□□□ 0.8
CLPTM1O96005 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.06■□□□□ 0.8
CLPTM1O96005 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.06■□□□□ 0.8
CLPTM1O96005 MIR4281-201ENST00000580852 62 ntBASIC20.06■□□□□ 0.8
CLPTM1O96005 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.06■□□□□ 0.8
CLPTM1O96005 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.06■□□□□ 0.8
CLPTM1O96005 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.06■□□□□ 0.8
CLPTM1O96005 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLPTM1O96005 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CLPTM1O96005 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLPTM1O96005 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CLPTM1O96005 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.05■□□□□ 0.8
CLPTM1O96005 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.05■□□□□ 0.8
CLPTM1O96005 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.05■□□□□ 0.8
CLPTM1O96005 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CLPTM1O96005 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
CLPTM1O96005 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CLPTM1O96005 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.04■□□□□ 0.8
CLPTM1O96005 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLPTM1O96005 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CLPTM1O96005 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CLPTM1O96005 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLPTM1O96005 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLPTM1O96005 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CLPTM1O96005 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLPTM1O96005 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CLPTM1O96005 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLPTM1O96005 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
CLPTM1O96005 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.04■□□□□ 0.8
CLPTM1O96005 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CLPTM1O96005 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CLPTM1O96005 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CLPTM1O96005 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms