Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.56■□□□□ 0.88
CACNA1AO00555 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.56■□□□□ 0.88
CACNA1AO00555 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CACNA1AO00555 PNMA6B-201ENST00000538162 1200 ntBASIC20.56■□□□□ 0.88
CACNA1AO00555 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1AO00555 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CACNA1AO00555 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1AO00555 AC026396.1-201ENST00000419388 421 ntBASIC20.56■□□□□ 0.88
CACNA1AO00555 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.56■□□□□ 0.88
CACNA1AO00555 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
CACNA1AO00555 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.56■□□□□ 0.88
CACNA1AO00555 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1AO00555 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.56■□□□□ 0.88
CACNA1AO00555 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.55■□□□□ 0.88
CACNA1AO00555 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CACNA1AO00555 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CACNA1AO00555 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.55■□□□□ 0.88
CACNA1AO00555 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1AO00555 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.55■□□□□ 0.88
CACNA1AO00555 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.55■□□□□ 0.88
CACNA1AO00555 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1AO00555 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1AO00555 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1AO00555 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.55■□□□□ 0.88
CACNA1AO00555 AC010141.3-201ENST00000456659 717 ntBASIC20.55■□□□□ 0.88
CACNA1AO00555 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.55■□□□□ 0.88
CACNA1AO00555 AC145285.6-201ENST00000604632 637 ntBASIC20.55■□□□□ 0.88
CACNA1AO00555 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1AO00555 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.54■□□□□ 0.88
CACNA1AO00555 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.54■□□□□ 0.88
CACNA1AO00555 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1AO00555 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1AO00555 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.54■□□□□ 0.88
CACNA1AO00555 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1AO00555 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.54■□□□□ 0.88
CACNA1AO00555 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.54■□□□□ 0.88
CACNA1AO00555 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.54■□□□□ 0.88
CACNA1AO00555 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1AO00555 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1AO00555 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CACNA1AO00555 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1AO00555 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.54■□□□□ 0.88
CACNA1AO00555 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.54■□□□□ 0.88
CACNA1AO00555 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1AO00555 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1AO00555 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
CACNA1AO00555 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.53■□□□□ 0.88
CACNA1AO00555 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.53■□□□□ 0.88
CACNA1AO00555 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.53■□□□□ 0.88
CACNA1AO00555 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.53■□□□□ 0.88
CACNA1AO00555 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.53■□□□□ 0.88
CACNA1AO00555 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.53■□□□□ 0.88
CACNA1AO00555 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1AO00555 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.52■□□□□ 0.88
CACNA1AO00555 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.52■□□□□ 0.88
CACNA1AO00555 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1AO00555 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1AO00555 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.52■□□□□ 0.88
CACNA1AO00555 NTF6B-201ENST00000591913 560 ntBASIC20.52■□□□□ 0.88
CACNA1AO00555 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1AO00555 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1AO00555 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.52■□□□□ 0.88
CACNA1AO00555 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1AO00555 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CACNA1AO00555 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CACNA1AO00555 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CACNA1AO00555 KRT17P3-201ENST00000420566 1262 ntBASIC20.52■□□□□ 0.87
CACNA1AO00555 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CACNA1AO00555 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CACNA1AO00555 SOX15-203ENST00000570788 1093 ntBASIC20.52■□□□□ 0.87
CACNA1AO00555 HLA-B-256ENST00000639848 1089 ntBASIC20.52■□□□□ 0.87
CACNA1AO00555 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1AO00555 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1AO00555 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1AO00555 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1AO00555 UPK3BP1-201ENST00000428678 509 ntBASIC20.51■□□□□ 0.87
CACNA1AO00555 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1AO00555 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1AO00555 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
CACNA1AO00555 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.51■□□□□ 0.87
CACNA1AO00555 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1AO00555 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1AO00555 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.5■□□□□ 0.87
CACNA1AO00555 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1AO00555 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1AO00555 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1AO00555 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1AO00555 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.5■□□□□ 0.87
CACNA1AO00555 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.5■□□□□ 0.87
CACNA1AO00555 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1AO00555 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1AO00555 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms