Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGN4O00479 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGN4O00479 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGN4O00479 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
HMGN4O00479 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGN4O00479 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.93■□□□□ 0.78
HMGN4O00479 BX842568.3-201ENST00000418104 571 ntBASIC19.93■□□□□ 0.78
HMGN4O00479 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGN4O00479 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.93■□□□□ 0.78
HMGN4O00479 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGN4O00479 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGN4O00479 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGN4O00479 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HMGN4O00479 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HMGN4O00479 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HMGN4O00479 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGN4O00479 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
HMGN4O00479 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
HMGN4O00479 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGN4O00479 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HMGN4O00479 AC024257.2-201ENST00000549699 147 ntBASIC19.92■□□□□ 0.78
HMGN4O00479 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
HMGN4O00479 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGN4O00479 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGN4O00479 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGN4O00479 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.92■□□□□ 0.78
HMGN4O00479 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.92■□□□□ 0.78
HMGN4O00479 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGN4O00479 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.91■□□□□ 0.78
HMGN4O00479 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.91■□□□□ 0.78
HMGN4O00479 FEM1AP4-201ENST00000443167 1987 ntBASIC19.91■□□□□ 0.78
HMGN4O00479 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.91■□□□□ 0.78
HMGN4O00479 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HMGN4O00479 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGN4O00479 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGN4O00479 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGN4O00479 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGN4O00479 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGN4O00479 AC133561.4-201ENST00000566112 224 ntBASIC19.9■□□□□ 0.78
HMGN4O00479 AL136162.1-201ENST00000607711 1078 ntBASIC19.9■□□□□ 0.78
HMGN4O00479 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGN4O00479 AC003102.1-202ENST00000563394 1796 ntBASIC19.9■□□□□ 0.78
HMGN4O00479 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGN4O00479 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGN4O00479 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
HMGN4O00479 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGN4O00479 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGN4O00479 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGN4O00479 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGN4O00479 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGN4O00479 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.89■□□□□ 0.77
HMGN4O00479 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGN4O00479 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
HMGN4O00479 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.89■□□□□ 0.77
HMGN4O00479 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGN4O00479 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGN4O00479 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGN4O00479 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGN4O00479 AC233992.3-201ENST00000607491 485 ntBASIC19.89■□□□□ 0.77
HMGN4O00479 AF106564.1-201ENST00000607058 2553 ntBASIC19.89■□□□□ 0.77
HMGN4O00479 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HMGN4O00479 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HMGN4O00479 AC135279.3-201ENST00000610945 1311 ntBASIC19.88■□□□□ 0.77
HMGN4O00479 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HMGN4O00479 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
HMGN4O00479 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.88■□□□□ 0.77
HMGN4O00479 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.88■□□□□ 0.77
HMGN4O00479 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGN4O00479 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
HMGN4O00479 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
HMGN4O00479 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 SMUG1P1-201ENST00000590640 811 ntBASIC19.87■□□□□ 0.77
HMGN4O00479 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGN4O00479 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.87■□□□□ 0.77
HMGN4O00479 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
HMGN4O00479 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms