Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 AL138781.1-201ENST00000566567 1274 ntBASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NOTCH3Q9UM47 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
NOTCH3Q9UM47 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 AC007322.1-201ENST00000426983 750 ntBASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 TBCB-214ENST00000629269 413 ntTSL 5 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 CPT2-209ENST00000636935 803 ntTSL 5 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
NOTCH3Q9UM47 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
NOTCH3Q9UM47 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 AC005224.4-201ENST00000583262 1652 ntBASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 C9orf163-202ENST00000624034 2573 ntBASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 UBE2DNL-204ENST00000602536 740 ntBASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 AC093323.1-202ENST00000635031 2045 ntBASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC16.45■□□□□ 0.22
NOTCH3Q9UM47 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 AC055733.4-201ENST00000638462 1354 ntBASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 PXK-203ENST00000383715 1756 ntTSL 5 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 AC098934.4-201ENST00000564127 592 ntBASIC16.44■□□□□ 0.22
NOTCH3Q9UM47 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms