Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLN6Q9NWW5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 AL157384.1-201ENST00000445995 2473 ntBASIC19.53■□□□□ 0.72
CLN6Q9NWW5 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.53■□□□□ 0.72
CLN6Q9NWW5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 KRT8P33-201ENST00000508125 1423 ntBASIC19.52■□□□□ 0.72
CLN6Q9NWW5 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CLN6Q9NWW5 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.52■□□□□ 0.71
CLN6Q9NWW5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLN6Q9NWW5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
CLN6Q9NWW5 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CLN6Q9NWW5 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLN6Q9NWW5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 AL033527.3-201ENST00000566366 1196 ntBASIC19.5■□□□□ 0.71
CLN6Q9NWW5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.5■□□□□ 0.71
CLN6Q9NWW5 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 AL121603.2-201ENST00000557373 2117 ntBASIC19.49■□□□□ 0.71
CLN6Q9NWW5 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
CLN6Q9NWW5 AC104564.3-201ENST00000582367 638 ntBASIC19.49■□□□□ 0.71
CLN6Q9NWW5 AL031848.2-201ENST00000607670 837 ntBASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms