Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
EXOSC3Q9NQT5 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
EXOSC3Q9NQT5 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 SMUG1P1-201ENST00000590640 811 ntBASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 AL136967.2-201ENST00000623968 743 ntBASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
EXOSC3Q9NQT5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 SUDS3P1-201ENST00000505831 966 ntBASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
EXOSC3Q9NQT5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 AP004607.7-201ENST00000527152 1677 ntBASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 TSPY26P-201ENST00000476365 1326 ntBASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 AC010542.4-201ENST00000563151 1910 ntBASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
EXOSC3Q9NQT5 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
EXOSC3Q9NQT5 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
EXOSC3Q9NQT5 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
EXOSC3Q9NQT5 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms