Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AF201337.1-201ENST00000520239 748 ntBASIC27.47■■□□□ 1.99
USP42Q9H9J4 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC27.47■■□□□ 1.99
USP42Q9H9J4 AC133552.2-202ENST00000575694 574 ntBASIC27.47■■□□□ 1.99
USP42Q9H9J4 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
USP42Q9H9J4 AC133041.1-202ENST00000642053 222 ntBASIC27.47■■□□□ 1.99
USP42Q9H9J4 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC27.47■■□□□ 1.99
USP42Q9H9J4 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
USP42Q9H9J4 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
USP42Q9H9J4 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
USP42Q9H9J4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
USP42Q9H9J4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC27.46■■□□□ 1.99
USP42Q9H9J4 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC27.46■■□□□ 1.99
USP42Q9H9J4 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
USP42Q9H9J4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
USP42Q9H9J4 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
USP42Q9H9J4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
USP42Q9H9J4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC27.46■■□□□ 1.99
USP42Q9H9J4 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC27.46■■□□□ 1.99
USP42Q9H9J4 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
USP42Q9H9J4 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
USP42Q9H9J4 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
USP42Q9H9J4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
USP42Q9H9J4 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
USP42Q9H9J4 AC055733.4-201ENST00000638462 1354 ntBASIC27.46■■□□□ 1.99
USP42Q9H9J4 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
USP42Q9H9J4 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
USP42Q9H9J4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
USP42Q9H9J4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
USP42Q9H9J4 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC27.45■■□□□ 1.98
USP42Q9H9J4 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.98
USP42Q9H9J4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
USP42Q9H9J4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
USP42Q9H9J4 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC27.44■■□□□ 1.98
USP42Q9H9J4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC27.44■■□□□ 1.98
USP42Q9H9J4 FAM201B-201ENST00000458407 597 ntBASIC27.44■■□□□ 1.98
USP42Q9H9J4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC27.44■■□□□ 1.98
USP42Q9H9J4 AC105036.2-201ENST00000569468 176 ntBASIC27.44■■□□□ 1.98
USP42Q9H9J4 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
USP42Q9H9J4 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC27.44■■□□□ 1.98
USP42Q9H9J4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
USP42Q9H9J4 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC27.44■■□□□ 1.98
USP42Q9H9J4 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC27.44■■□□□ 1.98
USP42Q9H9J4 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC27.44■■□□□ 1.98
USP42Q9H9J4 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
USP42Q9H9J4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC27.43■■□□□ 1.98
USP42Q9H9J4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC27.43■■□□□ 1.98
USP42Q9H9J4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC27.43■■□□□ 1.98
USP42Q9H9J4 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USP42Q9H9J4 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
USP42Q9H9J4 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC27.43■■□□□ 1.98
USP42Q9H9J4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC27.43■■□□□ 1.98
USP42Q9H9J4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
USP42Q9H9J4 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC27.42■■□□□ 1.98
USP42Q9H9J4 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC27.42■■□□□ 1.98
USP42Q9H9J4 AC010536.3-201ENST00000620306 533 ntBASIC27.42■■□□□ 1.98
USP42Q9H9J4 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC27.42■■□□□ 1.98
USP42Q9H9J4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC27.42■■□□□ 1.98
USP42Q9H9J4 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
USP42Q9H9J4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 UQCRFS1P1-201ENST00000435169 820 ntBASIC27.41■■□□□ 1.98
USP42Q9H9J4 AC010141.2-201ENST00000452426 721 ntBASIC27.41■■□□□ 1.98
USP42Q9H9J4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC27.41■■□□□ 1.98
USP42Q9H9J4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 AC008687.6-201ENST00000596318 630 ntBASIC27.41■■□□□ 1.98
USP42Q9H9J4 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC27.41■■□□□ 1.98
USP42Q9H9J4 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC27.41■■□□□ 1.98
USP42Q9H9J4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC27.41■■□□□ 1.98
USP42Q9H9J4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC27.41■■□□□ 1.98
USP42Q9H9J4 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
USP42Q9H9J4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC27.41■■□□□ 1.98
USP42Q9H9J4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC27.41■■□□□ 1.98
USP42Q9H9J4 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC27.4■■□□□ 1.98
USP42Q9H9J4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
USP42Q9H9J4 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC27.4■■□□□ 1.98
USP42Q9H9J4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
USP42Q9H9J4 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
USP42Q9H9J4 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
USP42Q9H9J4 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
USP42Q9H9J4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
USP42Q9H9J4 AC093827.2-201ENST00000512654 315 ntBASIC27.39■■□□□ 1.97
USP42Q9H9J4 DET1-205ENST00000558413 583 ntTSL 4 BASIC27.39■■□□□ 1.97
USP42Q9H9J4 AC138907.5-202ENST00000569484 235 ntBASIC27.39■■□□□ 1.97
USP42Q9H9J4 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
USP42Q9H9J4 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC27.39■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms