Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS11Q9H270 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS11Q9H270 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS11Q9H270 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.54■■□□□ 1.04
VPS11Q9H270 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
VPS11Q9H270 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS11Q9H270 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS11Q9H270 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS11Q9H270 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS11Q9H270 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS11Q9H270 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS11Q9H270 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
VPS11Q9H270 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS11Q9H270 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
VPS11Q9H270 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS11Q9H270 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS11Q9H270 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS11Q9H270 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS11Q9H270 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS11Q9H270 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
VPS11Q9H270 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.52■■□□□ 1.04
VPS11Q9H270 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS11Q9H270 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS11Q9H270 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS11Q9H270 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS11Q9H270 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.51■■□□□ 1.03
VPS11Q9H270 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS11Q9H270 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS11Q9H270 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS11Q9H270 AC241377.3-202ENST00000626088 1088 ntBASIC21.51■■□□□ 1.03
VPS11Q9H270 AC241585.3-202ENST00000628937 1088 ntBASIC21.51■■□□□ 1.03
VPS11Q9H270 AC245100.8-202ENST00000629247 1058 ntBASIC21.51■■□□□ 1.03
VPS11Q9H270 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
VPS11Q9H270 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS11Q9H270 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
VPS11Q9H270 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS11Q9H270 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS11Q9H270 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS11Q9H270 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS11Q9H270 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS11Q9H270 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS11Q9H270 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
VPS11Q9H270 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
VPS11Q9H270 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
VPS11Q9H270 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS11Q9H270 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
VPS11Q9H270 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.5■■□□□ 1.03
VPS11Q9H270 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS11Q9H270 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS11Q9H270 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.49■■□□□ 1.03
VPS11Q9H270 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.49■■□□□ 1.03
VPS11Q9H270 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 AC006455.2-201ENST00000429931 906 ntBASIC21.49■■□□□ 1.03
VPS11Q9H270 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
VPS11Q9H270 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.49■■□□□ 1.03
VPS11Q9H270 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.49■■□□□ 1.03
VPS11Q9H270 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.49■■□□□ 1.03
VPS11Q9H270 AC133637.1-201ENST00000624115 1537 ntBASIC21.49■■□□□ 1.03
VPS11Q9H270 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS11Q9H270 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS11Q9H270 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS11Q9H270 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS11Q9H270 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS11Q9H270 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS11Q9H270 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
VPS11Q9H270 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS11Q9H270 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS11Q9H270 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms